Sphingobacteriaceae bacterium GW460-11-11-14-LB5: CA265_02920
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Entry
CA265_02920 CDS
T05546
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sbx
Sphingobacteriaceae bacterium GW460-11-11-14-LB5
Pathway
sbx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CA265_02920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbx03021
]
CA265_02920
03400 DNA repair and recombination proteins [BR:
sbx03400
]
CA265_02920
Enzymes [BR:
sbx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CA265_02920
Transcription machinery [BR:
sbx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CA265_02920
DNA repair and recombination proteins [BR:
sbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CA265_02920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ARS38684
UniProt:
A0A1X9Z154
LinkDB
All DBs
Position
724717..729003
Genome browser
AA seq
1428 aa
AA seq
DB search
MSYKKDNKLKSNFTSITISLSSPEIILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIALVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDLIIYYERYVVIQSGLMAEEGINYMDFLTEEEYLDILDKLPKENQYLDD
KDPNKFIAKMGAEALEDLLKRIDLDTLSYDLRHQAANETSQQRKNEALKRLQVVEAFRGA
NTRIENRPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPSLKLHECGIPKDMAAELYKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAILEAQVLMLAAHNILNPANGTPITVPSQDMVLGLYYITKGRRTDETRVVK
GQDSAFYSPEEVIIAYNEKELDLHAFIKVRVNVKQADGSIVNKLTETTVGRVLFNQMVPE
EVGYINELLTKKSLRDIIGEVVKMTGMARASQFLDDIKELGFKMAFQGGLSFNLQDVNIP
VEKHTLLEQAAAEVEEVRNNYNMGFITNNERYNQIIDIWTRINNRLTTFVMTQLSSDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSGGDIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVNDNDCGTLRGMYTTALKDQEDIVE
PLYDRILGRTSLHDVYNPLDNTLLVGAGEDINEDVAKLIEESPLEGIEIRSVLTCESKRG
VCALCYGRNLASGKRVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESNIVAK
FDGVIEFENIRTVDTQTEEGTVQVVLGRSGEFKIVEPGTGRIIVTNNIPYGAFLFVKEGD
KLSKGDKICSWDPYNAVILSEFAGKAQFDAIIEGVTFREESDEQTGHREKVIIDTRDKTK
NPSVQIVDKKGEMIKGYNIPVGAHVSVDEGEAIQTGQIIAKIPRATGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITIESKDGEVKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILSIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQK
VHIEDPGDTIFLENNAVDRWDFADENDAMYDKKVVEDAGDSTDFKPGQIVSLRRLRDENS
QLKRKDLKQITVRDARPATASSILQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NMLGLKENVIVGHLIPSGTGVRGYERIIVGSQEEYDKLLASKQEEVEA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaattaaaaagcaatttcacatcaatcacgattagctta
tcgtctccagaaattattttggaacgttcaagcggtgaggtgttgaaaccagaaaccatt
aactaccgtacttacaaacctgagcgtgatggtttgttctgtgagcgtatttttggtccg
gtaaaagattacgaatgtcattgcggtaaatacaaacgtatccgttataaaggtattgtt
tgcgatcgttgtggtgttgaagtaacggagaaaaaagtacgtcgtgagcgtatgggccac
attgctttagtggttcctgttgcacacatctggtacttccgctctttaccaaacaaaatc
ggttatttattaggtttacctactaaaaaattagatttaattatctattacgagcgttac
gtagttattcaatcaggcttaatggctgaagaaggtatcaactatatggacttcttaacg
gaagaagagtatttagatatcttagataaattacctaaagaaaaccaatacctggatgat
aaagatcctaataaattcatcgccaaaatgggtgctgaagcattagaagatttattaaaa
cgtattgatttagatactttatcttatgatttacgtcaccaggcagctaacgaaacttct
cagcaacgtaaaaatgaggctttaaaacgtcttcaggttgttgaagctttccgtggcgct
aatacacgtattgagaatcgccctgagtggatgattgttaaaatcgttccggttattcca
ccagaattacgtcctttagtaccattagaaggtggccgtttcgctacttccgatttaaat
gatttataccgtcgtgtaattatccgtaacaaccgtttaaaacgtttgatcgagattaaa
gcaccagaggtaattttacgtaacgagaaacgtatgttgcaggaagctgtagattcgtta
ttcgataactcacgtaaagttaatgcggtaaaaactgaaggtaaccgtgctttgaaatca
ctttcagatatcttgaaaggtaaacaaggtcgtttccgtcagaacttattaggtaaacgt
gtggattattcagctcgttcggtaattgttgtagggcctagccttaaattacacgagtgc
ggtattccgaaagatatggctgctgaactttacaaaccgttcattattcgtaagatgatt
gagcgtggtgtagtaaaaacagttaaatctgcgaagaaaatcgttgatagaaaagatccg
ttagtttgggatatcttagaaaatgtattaaaaggtcacccggtattattaaaccgtgca
cctacgctacacagactaggtattcaggctttccagccaaaattaattgaaggaaaagca
atccagttacacccactagtttgtactgcatttaacgccgattttgatggtgaccagatg
gctgtgcacttaccgttaggtaatgccgcaattttggaagcccaggttttgatgcttgca
gcacataacatcttaaaccctgcaaacggtacaccaattacagtaccttctcaggatatg
gttttgggtctttattatattactaaaggccgtagaacagatgaaaccagagtggtaaaa
ggacaggattctgctttctattctccggaagaagttattattgcttataacgaaaaagaa
ttagacttgcacgcatttatcaaagtaagggtaaatgttaaacaagctgatggttctatc
gttaataaattaactgaaactactgtaggtagagtattgttcaaccaaatggttcctgaa
gaagttggttatatcaatgagctattaaccaaaaaatctttaagagatattattggtgaa
gtagtgaaaatgaccggtatggcccgtgcttctcaattcttggatgatatcaaagaatta
ggtttcaaaatggcattccagggaggtttatcgttcaacttacaagacgtaaacattccg
gttgaaaaacatactttattagaacaggcagcagctgaggttgaagaggtaagaaacaac
tataacatgggtttcattaccaacaacgagcgttacaaccagattatcgatatctggacc
cgtatcaacaacaggttaactacattcgttatgactcagttatcatcagataaccaaggt
tttaactctgtttacatgatgcttgattcaggtgcacgtggatctaaagagcagattcgt
cagctttgcggaatgcgtggtttgatggcgaaacctcaaaaatcaggttcaggtggcgat
atcatcgaaaacccgatcttatcaaactttaaagaaggtttatcggtattagagtacttt
atctctactcacggtgcacgtaaaggtttggcggatacggcgttaaaaacggcggatgcg
ggttacttaacccgtcgtttacatgatgtagcgcaggatatgattgttaacgataacgat
tgtggtactttaagaggtatgtatacaaccgctttaaaagatcaggaagatatcgttgag
ccattgtacgacaggattttaggccgtacttcattacatgatgtatacaatcctttggat
aatacattattagtaggtgcgggcgaagatattaacgaagatgttgctaaattgatcgaa
gaatctccgttagaaggtatcgagatccgttcagtattaacctgcgaatctaaacgtggt
gtttgtgcattatgttatggccgtaacttggcatctggtaaacgcgttcaaagaggtgag
gcagttggtgtaattgcagcacagtcaatcggtgagccgggtacacagttaacacttcgt
actttccacgtgggtggtactgcatcaaacattgctgcagaatctaacatcgtagctaag
tttgatggtgtaatcgaattcgaaaatatccgtactgttgatacacaaacagaagaagga
acagttcaggtggtattaggtcgttcaggtgagttcaaaattgttgagccaggaaccgga
cgtatcattgtaaccaacaacattccttacggtgcattcttattcgtaaaagaaggtgat
aaactttctaaaggtgataaaatctgttcgtgggatccgtacaacgcggttattctatca
gaatttgccggtaaagcacaatttgatgccattattgaaggtgtaaccttccgtgaagaa
tcagatgagcaaactggtcaccgtgaaaaagtaattatcgatacacgtgataaaactaaa
aacccttcagttcagatcgttgataaaaaaggcgaaatgattaaaggttataacattccg
gtaggtgcccacgtttcagttgatgaaggtgaagctatccaaactggtcagattatcgct
aagattcctcgtgcaactggtaaaacccgagatattacaggtggtttacctcgtgtaacg
gaattatttgaagcacgtaacccatctaacccagctgtagtaactgagattgatggtgtg
gtaactttaggtggcgttaaacgtggtaaccgtgagatcacaatcgaatcgaaagatggt
gaagttaaaaaatacctggttccattgtcgaaacacatccttgtacaggataacgacttt
gtgaaagccggtatgcctttatcagatggttcaatttctcctgccgatatcttatcaatt
aaaggtcctgcagcggttcaagaatacttagtaaatggtattcaagaggtttaccgttta
caaggtgtgaaaattaacgataagcacttcgaggtaattgttcaccagatgatgcagaaa
gttcacattgaagatccaggtgatactattttcttagaaaacaatgctgttgaccgttgg
gattttgccgatgagaacgatgcaatgtacgacaagaaagttgttgaagacgcaggtgat
tctacagatttcaaaccaggtcagattgtttcattacgtagattaagagatgaaaattct
caattgaaacgtaaggatttaaaacagattacggttagagatgcaagaccagcaactgca
agttctatcttacaaggtattacacgtgcatcattaggtactaaatcgttcatttctgcg
gcttcgttccaggaaactacgaaagtattaaatgaggcagcaattgcaggtaaacgcgat
aatatgttaggcttgaaagaaaacgtgatcgttggtcacttaatcccttcaggtactggt
gtacgtggttacgaaagaatcatcgttggttctcaggaagaatacgataaattattagct
tcgaaacaagaagaagtagaagcttag
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