Sphingobacteriaceae bacterium GW460-11-11-14-LB5: CA265_08985
Help
Entry
CA265_08985 CDS
T05546
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sbx
Sphingobacteriaceae bacterium GW460-11-11-14-LB5
Pathway
sbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA265_08985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbx03019
]
CA265_08985
03016 Transfer RNA biogenesis [BR:
sbx03016
]
CA265_08985
Enzymes [BR:
sbx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CA265_08985
Messenger RNA biogenesis [BR:
sbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CA265_08985
Transfer RNA biogenesis [BR:
sbx03016
]
Prokaryotic type
tRNA degradation factors
CA265_08985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
HutF_N
Vip3A_N
Motif
Other DBs
NCBI-ProteinID:
ARS39776
LinkDB
All DBs
Position
2240133..2242268
Genome browser
AA seq
711 aa
AA seq
DB search
MNVIKKSFDLGDGRIVEIETGKLAKQADGSVVVKMGDTMLLATVVSTVGAKPGTDFLPLS
VDYQEKYAATGRIPGGFLRREARLSDYEVLISRLVDRALRPMFPSDYHSDTQVMISLISA
DKDIMPDCLAGLAASAALSVSDIPFNGPISEVRVAKIDGKLIINPKASELERATLEFMVA
GSANDIGMVEGECDEIQEDEMVEALKFAHDAIKVQCAVQVELTEATGKTVKREYSHEDHD
ADLKAKVYADTYDKVYAVAKAGGNKDVRKEGFTAIINEFFEAMPEDTADLTKAMAKHYYH
DVQYDAIRNLLLDEGIRLDGRKTTEIRPIWSEVGYLPAAHGSAVFTRGETQSLTSVTLGS
KDDEQMIDGAFFNGYNKFLLHYNFPGFSTGEVRPNRGAGRREIGHGALAQRSLKKVLPQG
EANPYTIRVVSDILESNGSSSMATVCAGTLALMDAGIKIKSPVSGIAMGLITDEKTGKYA
ILSDILGDEDHLGDMDFKVTGTEHGIVACQMDLKINGLSYEVLTKALLQAKDGRLHILNE
MKKTISTPNEDYKPHAPRIVSLTIDKEFIGAIIGPGGKIIQEMQRETGASISIEEVDGKG
IVEVFADNKAAIDAAVTRIRNIVAKPEIGEIYQGKVKSIMPFGAFVEVMPGKDGLLHISE
ISWERLETMDGVLKEGDKIEVKLLDIDKQGKMKLSRKVLLPRPEKPAAPQA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtaataaaaaaatcgttcgatttgggcgatggcagaattgtagaaattgaaact
ggtaaattggctaaacaggctgatggttcggttgtggtaaaaatgggcgatacgatgttg
ttagcaactgtagtatcaactgttggcgctaaaccaggtactgattttttacctttatcg
gttgattatcaggaaaaatatgcggctacaggccgtatcccaggaggctttttacgtcgc
gaagcaagattatctgattacgaggtattaatctctcgtttagtggatagagctttacgc
ccaatgttcccaagtgattatcactctgatacacaggtgatgatttcattaatctctgct
gataaagatatcatgccagattgtttggcaggtttagcggcatctgctgcattatcagtt
tctgatatccctttcaatggtccaatttctgaagtacgtgttgcaaaaatcgatggtaaa
ttaatcatcaatccgaaagctagcgaactggaacgtgcaactttagagtttatggttgct
ggttcggctaacgatataggcatggttgaaggtgagtgtgatgaaattcaggaagacgaa
atggttgaggctttaaaatttgcacacgatgcaattaaagttcaatgtgccgttcaggtt
gaattaactgaagctaccggcaaaacggttaaacgcgaatacagtcacgaagaccacgat
gcggatttaaaagctaaagtttatgctgatacttacgataaagtttatgctgtagcaaaa
gctggtggcaataaagatgttcgtaaagaaggtttcaccgcgatcattaacgaattcttc
gaagcaatgccagaagatactgcagatttaactaaagcaatggctaaacattattatcat
gatgttcagtatgatgccatcagaaacttattgttggatgaaggtatccgtttagatggt
cgtaagactacagaaatccgcccaatctggagtgaagttggttatttacctgctgcacac
ggttcggctgtatttacacgtggcgaaacgcaatcattaacttcagttactttaggtagc
aaagatgatgagcaaatgattgacggtgctttctttaatggttataacaaattcttattg
cactataatttccctggtttctcaactggtgaggttagaccaaacagaggcgctggccgt
cgcgaaattggtcacggtgctttagcacaacgttcattgaaaaaagtattgcctcaaggt
gaagcaaatccttataccatccgtgtggtttctgatatcttagaatcaaacggttcatca
tcaatggcaactgtttgtgctggtacattagcattaatggatgcaggtattaaaatcaaa
tcgccagtatctggtatcgcaatgggtttaattactgatgagaaaaccggtaaatatgca
atcctttctgatattttaggtgatgaagatcacttaggtgatatggactttaaagtaacc
ggtaccgagcatggtattgttgcttgccagatggacttaaaaatcaatggtttatcttac
gaagttttaactaaagctttgttacaggctaaagatggtcgtttacacatcttaaacgag
atgaagaaaaccatcagtacacctaatgaagattacaaaccacatgcgccacgtattgtt
tctttaactattgataaagaatttatcggagcaattatcggccctggaggtaaaattatc
caggaaatgcaacgcgaaaccggtgcttcaatctctatcgaagaagttgatggtaaaggt
attgtggaagtatttgctgataacaaagccgctattgatgcagcagttacccgtatccgt
aatatcgtagctaaaccagaaattggcgaaatttaccagggtaaagtaaaatcaattatg
ccattcggtgcgtttgttgaggtgatgccaggtaaagatggtttattacacatctctgaa
atttcatgggaacgtttagaaaccatggatggtgtgctaaaagaaggtgataaaatcgag
gttaaattattagacatcgataaacaaggtaaaatgaaactttcccgtaaagttttattg
ccaagacctgaaaaaccagcagcgccacaagcttaa
DBGET
integrated database retrieval system
