Sphingobacteriaceae bacterium GW460-11-11-14-LB5: CA265_11985
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Entry
CA265_11985 CDS
T05546
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sbx
Sphingobacteriaceae bacterium GW460-11-11-14-LB5
Pathway
sbx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CA265_11985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbx03400
]
CA265_11985
Enzymes [BR:
sbx01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CA265_11985
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CA265_11985
DNA repair and recombination proteins [BR:
sbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CA265_11985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Ribosomal_S13
NFACT_N
FANCI_HD1
Motif
Other DBs
NCBI-ProteinID:
ARS40334
UniProt:
A0A1X9Z626
LinkDB
All DBs
Position
complement(2970077..2970847)
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AA seq
256 aa
AA seq
DB search
MAELPDLEVFSRILTRRYVGKVLKNIDVEVAGKLNVSAQELKGQLEGHKLSAVKRSGKTL
QFHFGAGRVLGVHLMLRGELVALEDKPPRFPILIFTFKGGEGFAVTDMQKQATPTLNPAE
NDVPDALELDYSSLKKILSGKKTLIKTLLMNQKKVRGIGNSYGDEILYHAGISPFSVAGS
IPEQDVKRLNECIHSVLKEAINKIAKENGDELRGELRDFMEVHGAKIKETKKGEEVFSEK
ISGRTSYYTRSQKLFG
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atggctgaactccctgatcttgaagttttctcgcgcatccttacccgcaggtatgttgga
aaggtactgaaaaatatcgatgtagaagtggccggtaagcttaatgtttctgctcaggaa
ttaaaaggccaactggaaggacataagctcagcgctgtaaaacgctcgggcaaaactttg
cagtttcattttggagcaggacgcgtacttggcgtacacctgatgctaagaggggaactg
gtggcactcgaagataagccaccaaggttcccgatactgatctttacttttaagggaggt
gagggtttcgctgtcacagatatgcagaaacaagcaaccccgacactcaatccagctgaa
aatgatgtgcccgatgcacttgaactggattatagttcattaaagaaaatcctgagtgga
aaaaaaacactgatcaaaacgcttttgatgaaccagaaaaaggtgcggggtatcgggaat
tcctatggcgatgaaatcctttaccatgccgggatctcgcctttctctgttgcgggatca
attccggaacaggacgtgaagcggttaaatgagtgtatacattcggtcttgaaggaggca
atcaacaaaatcgcgaaagaaaatggtgatgaactgcgcggtgagctcagggattttatg
gaagtgcacggagcgaagataaaagagaccaaaaagggagaagaggttttttcagagaaa
attagtggaaggaccagttattataccaggtctcagaaacttttcggatga
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