Sphingobacteriaceae bacterium GW460-11-11-14-LB5: CA265_16790
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Entry
CA265_16790 CDS
T05546
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sbx
Sphingobacteriaceae bacterium GW460-11-11-14-LB5
Pathway
sbx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CA265_16790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbx03021
]
CA265_16790
03400 DNA repair and recombination proteins [BR:
sbx03400
]
CA265_16790
Enzymes [BR:
sbx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CA265_16790
Transcription machinery [BR:
sbx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CA265_16790
DNA repair and recombination proteins [BR:
sbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CA265_16790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
RAD51D_N
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ARS41222
UniProt:
A0A1X9Z863
LinkDB
All DBs
Position
complement(4213647..4214639)
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPDKVIMQKSTDFDGTFEFRPLEPGFGVTIGNALRRILLSSLEGYAITTIRFS
GVSHEFSTMKGVVEDLTDIILNLKQVRFKKTGDSGDSEKVFIIVNGQDQFKAGDITKFSN
NFTVLNPEHVICNMDKSVTLEVELTINKGRGYVPAEENKVADAVVGVIAIDSIYTPMKNV
KYTIENFRVEQKTDYEKLVLDISTDGSIHPEEALKEAAKILIQHFMLFSDENLVLESQAK
EETKEVDEEILHMRKILKTELVDMDLSVRALNCLKAADIRTLADLVSYDVADMLKFRNFG
KKSLTEIQELVKSKGLSFGMNLSKFKLDEE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttagcatttcagaaaccagacaaagtgatcatgcagaaatcaactgatttc
gatggcacatttgaatttcgtcctttagagcccggtttcggtgtaacaattggtaatgcc
ttaagaagaatcttactttcttcattagaaggttatgctattactactattcgtttttca
ggcgtttctcacgaattttctaccatgaaaggtgttgtagaagatttaactgatattatc
ttaaacttaaaacaagtgcgttttaagaaaacaggtgattcaggtgattctgaaaaagtt
ttcatcatcgttaatggtcaagatcagtttaaagctggtgatatcactaaattctctaac
aactttacagttttaaaccctgagcatgtaatttgcaacatggataaatctgttactttg
gaagtggaattaaccatcaataaaggacgtggttatgtacctgctgaagaaaataaagtt
gctgatgctgttgtaggtgtaatcgcaatcgattcgatttatactccaatgaaaaatgta
aaatacacgatcgaaaactttcgtgttgagcaaaaaacggattatgaaaaattggtttta
gatatctctactgacggttcaattcatcctgaagaagcattaaaagaagcggctaagatc
cttatccaacactttatgttattctctgatgagaatttggtattagaatctcaagctaaa
gaagaaactaaagaagttgatgaggaaattttacatatgcgtaaaatccttaaaactgaa
ttagtggatatggatctttcagttagggcattaaactgcttaaaagctgctgatatccgt
actttagctgatttagtttcttacgatgtggctgatatgttaaaattcagaaacttcggt
aaaaaatctttaacagagatccaggaattagtaaaatcaaaaggtttatcatttggtatg
aacctgtctaaatttaaattagacgaagagtag
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