Sphingobacteriaceae bacterium GW460-11-11-14-LB5: CA265_21770
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Entry
CA265_21770 CDS
T05546
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sbx
Sphingobacteriaceae bacterium GW460-11-11-14-LB5
Pathway
sbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA265_21770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbx03019
]
CA265_21770
Enzymes [BR:
sbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CA265_21770
Messenger RNA biogenesis [BR:
sbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA265_21770
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
Flavi_DEAD
CMS1
Z1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ARS42141
UniProt:
A0A1X9ZB94
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All DBs
Position
5348828..5350048
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AA seq
406 aa
AA seq
DB search
MNFNDFNFNPDLYEGLMAMGYKSATPIQEQAIPVILDNHDLIACAQTGTGKTASYLLPVM
DKISKAADRHNNTLILAPTRELAQQIDLQVEALAYFTNISSLAVYGGGDGIAYEQQKRSM
REGVDIIIATPGRLMAHLSSGVLKLEHLQHLILDEADRMLDMGFYDDIIRIISYLPKKRQ
TLLFSATMAPKIRTMAGKILHEPKQITISIAKPAEGIDQQAYNIHDQQKQALLTDIFKSG
QYKSSIIFVSTKDKVKALFKTFKGLGIKAEAFHSDLGQKEREDILLAFKNRRLPILIGTD
VLSRGIDVEGIDLVINYDVPGDPADYVHRIGRTARAATKGTAITLVNGRDKRKFDNIEKL
IEKEVPRMPLPESIAAMEITHVEEKKPQHKGKKKVWHKKKKPKPSA
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttaacgactttaattttaaccccgatttatacgaaggtttaatggccatgggg
tataaaagcgctactccaatacaagaacaagccatcccggtaattttagataatcatgat
ctgattgcctgcgcgcaaaccggtaccggaaaaacagccagctatttattacccgtaatg
gataaaattagcaaagcggctgacagacataacaataccttgatcctggctccaacacgt
gagcttgcgcaacagattgatttacaggtagaggcgctggcttattttaccaatatcagt
tcattagcagtttacggcggcggagatggtattgcctatgaacagcaaaaacgttctatg
cgcgaaggcgtagatattattattgctactccgggcaggctaatggcacatttatcttca
ggcgtgctaaaactggaacatttgcagcatttgattttagatgaagccgataggatgttg
gatatgggtttttacgacgatattatccgcattattagctacctgccaaagaaaaggcaa
acgcttttattctccgctacaatggcaccgaaaataaggactatggcgggcaagattttg
cacgaaccgaagcagattaccatttcaattgctaaacctgctgaaggaatagatcaacag
gcctataatattcatgatcagcagaaacaggctttattaaccgatatttttaaaagcgga
caatataaaagcagcattatttttgtttcgaccaaggataaagtaaaagctttatttaaa
acttttaaaggattaggcatcaaagccgaagcttttcactccgatttggggcagaaagaa
cgcgaagatattttactggcttttaaaaaccgcaggttgccaattttaattggaacggat
gtattatcccgcggaatcgatgtagagggaatcgacctggtcatcaattatgatgttccc
ggcgatccggccgattatgtacacaggattggtcgtaccgcaagagctgcaaccaaagga
acagctattacattggttaacggaagagataaacgtaaattcgataacattgaaaagtta
attgagaaggaagttccccggatgccattgccagaaagtatagctgcaatggaaattaca
catgtggaggaaaaaaaaccgcagcataaaggcaagaaaaaggtttggcacaaaaagaaa
aaaccaaaaccttctgcttaa
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