Streptomyces buecherae: H7H31_11865
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Entry
H7H31_11865 CDS
T07050
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sby
Streptomyces buecherae
Pathway
sby03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H7H31_11865 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sby03400
]
H7H31_11865 (mfd)
Enzymes [BR:
sby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H7H31_11865 (mfd)
DNA repair and recombination proteins [BR:
sby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H7H31_11865 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNJ40473
LinkDB
All DBs
Position
complement(3186296..3189865)
Genome browser
AA seq
1189 aa
AA seq
DB search
MSLHGLLDAVVHDPALAEAVRAATDGHRTHLDLVGPPAARPLAVAALARGAGRPVLAVTA
TGREAEDLAAALRSLMPEGQEHGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLTHPSA
DDPTAGPVSVVVAPIRAVLQPQVKGLGELEPVALRGGQSADLGEVVEGLAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTDDVRRRAAELAESHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPAGA
MSVVCDPERVRTRAADLVATSQEFLAASWAASAGGGEAPIDLGAASLWGIADIRDRAREL
GMMWWSISPFAAGDGLDEAGVAGGPTDGDTLTLGMRAPELYRGDIARALADTKGWLADGW
RTVYLTEGHGPASRTVEVLSGEGIAARLDPDLAELSPSLVHVSCGSVERGFIDPGLKLAV
LTETDLTGQKAAGKDGTRMPARRRKTIDPLTLQAGDYIVHEQHGVGRYIEMVQRTVQGAT
REYLLVEYAPAKRGQPGDRLFVPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAV
KEIAADLIKLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVP
MDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYGQFPVVVK
ALSRFQTDTEAKAVLEGLRDGSVDIVIGTHRLFSSETRFKDLGLVIVDEEQRFGVEHKEQ
LKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAA
IRRELLREGQVFYIHNRVESIDRAAAKLREIVPEARIATAHGQMGESALEQVVVDFWEKK
FDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKP
LTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGE
AVADYRTSLEGGAEEEPPIEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAANSEEDIAA
VREELTDRYGPLPEPVENLLLVAGLRMLARACGVSDITLQGSQVRFGPVELRESQELRLG
RLHPRAVLKPGPRQVLVPRPTTGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgatgccgtcgtccatgaccccgcgctcgccgaggcggtg
cgcgcggccacggacggtcaccgcacgcacctcgacctcgtggggccgccggcggcgcgg
cccctggccgtggcggcgctggcgcgcggggccggccggccggtgctggccgtgaccgct
accgggcgcgaggccgaggacctggccgccgcgctgcgctcgctgatgcccgagggccaa
gagcacggcgtggtggagtacccgtcgtgggagacgctgccgcacgagcggctctcgccg
cgctcggacaccgtcgggcgccgcctcgccgtgctgcgccggctgacccacccgagcgcc
gacgacccgaccgccggcccggtcagcgtggtcgtcgcgcccatccgcgccgtgctccaa
ccccaggtcaagggccttggcgagctggagccggtggcgctgcgcggcgggcagagcgcc
gacctgggcgaggtcgtggagggcctggcggcagccgcgtacgcccgtgtcgaactggtc
gagaagcgcggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgcccaccgag
gagcacccgctgcgggtggagttctggggggacgaggtcgaggagatccggtacttcaag
gtcgccgaccagcgctcgctcgaagtggccgagcacgggctctgggcgccgccctgccgt
gagctgctgctcaccgacgacgtgcggcggcgcgccgccgagctggccgagtcccacccg
gagttgggcgaactgctcggcaagatcgccgagggcatcgccgtcgagggcatggaatcg
ctggccccggtcctggtggacgagatggagctgctgctcgacgtgttgcccgcgggcgcg
atgagcgtggtgtgcgacccggagcgggtgcggacccgggcggccgacctggtggccacc
agccaggagttcctggcggcgtcctgggccgcgtcggccggcggcggcgaggcccccatc
gacctgggcgcggcctcgctgtggggcatcgccgacatccgggaccgggcccgcgaactg
ggcatgatgtggtggtcgatctcgccgttcgccgccggcgacggcctcgacgaggccggc
gtggccggcgggccgacggacggcgacaccctgaccctgggcatgcgcgcccccgagctg
taccggggcgacatcgcccgggcgctcgccgacaccaagggctggctcgccgacggctgg
cgcacggtctacctcaccgagggccacggccccgcctcgcgcaccgtcgaggtgctcagc
ggcgagggcatcgccgcccgcctcgacccggacctcgccgagctgtctccctcgctggtg
cacgtgtcctgcggctccgtcgagcgcggcttcatcgacccgggcctcaagctcgcggtg
ctcaccgagaccgacctgaccggccagaaggcggccggcaaggacggcacccggatgccg
gccaggcgccgcaagaccatcgacccgctcaccctccaggccggcgactacatcgtgcac
gagcagcacggtgtgggccgctacatcgagatggtgcagcgcaccgtgcagggcgcgacc
cgcgagtacctgctggtcgagtacgcgccggccaagcgcggccagcccggcgaccggctg
ttcgtgccgaccgaccagttggagcaggtcaccaagtacgtgggcggcgaggccccgacc
ctgcaccggctcggcggcgccgactggaccaagaccaaggcgcgggccaagaaggcggtc
aaggagatcgccgccgacctgatcaagctctactcggcccggatggcggcccccggccac
accttcggcccggacaccccctggcagcgcgagctggaggacgcgttcccgtacgcggag
acgcccgaccagctcaccaccatcgccgaggtcaaggaggacatggagaagtcggtcccg
atggaccggctgatctgcggcgacgtcggctacggcaagacggagatcgcggtgcgggcc
gcgttcaaggccgtgcaggacggcaagcaggtcgccgtcctggtgcccaccacgctgctg
gtgcagcagcacttcggcaccttcagcgagcggtacgggcagttccccgtcgtggtcaag
gcgctgtcccggttccagacggacaccgaggccaaggccgtcctggaggggttgcgggac
ggctcggtggacatcgtcatcggcacccaccggctgttctcgtccgagaccaggttcaag
gacctgggcctggtcatcgtggacgaggagcagcggttcggcgtcgagcacaaggagcag
ctcaagaagttgcgcgccaacgtcgacgtgctgaccatgtcggccacgcccatcccgcgc
accctggagatggccgtcaccggcatccgcgagatgtccacgatcaccaccccgccggag
gagcggcacccggtgctgaccttcgtcggcccgtacgaggaacggcagatcggcgcggcc
atccggcgcgaactgctgcgcgaggggcaggtcttctacatccacaaccgcgtcgagtcc
atcgaccgggccgccgccaagctgcgcgagatcgtgcccgaggcgcgcatcgccacggcg
cacgggcagatgggcgagagcgccctggagcaggtggtggtggacttctgggagaagaag
ttcgacgtgctggtctccaccaccatcgtcgagtcgggcatcgacatctccaacgccaac
accctgatcgtcgagcgcggcgacaacttcggcctctcccagttgcaccagctccgcggc
cgggtcggtcggggccgcgagcgcgggtacgcctacttcctgtacccgccggagaagccg
ctgaccgagaccgcccacgaacgcctggcgaccatcgcccagcacaccgagatgggcgcg
ggcatgtacgtggcgatgaaggacctggagatccgcggcgcgggcaacctgctcggcggc
gagcagtccggacacatcgcgggcgtcggcttcgacctgtacgtccgcatggtcggcgag
gccgtcgcggactaccggacctcgctggagggcggcgccgaggaggagccgccgatcgag
gtcaagatcgaactcccggtggacgcgcacgtcccgcacgactacgcgcccggcgagcga
ctgcgcctccaggcgtaccggtccatcgccgcggccaacagcgaggaggacatcgccgcc
gtccgcgaggagctgaccgaccggtacgggccgctgcccgagccggtggagaacctgctg
ctcgtcgccggcctgcggatgctcgcccgcgcctgcggcgtcagcgacatcaccctccag
ggctcgcaggtccgcttcggcccggtggagctgcgcgagtcgcaggagctgcggctcggg
cggctgcacccgcgagcggtgctcaagccggggccgcgacaggtcctggtgccccggccg
acgaccggcaagatcggcggcaagccggtggtgggccgcgaactgctcgcctggaccggc
gagttcctcacgaccatcctcggctcgtag
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