Streptomyces buecherae: H7H31_24500
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Entry
H7H31_24500 CDS
T07050
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sby
Streptomyces buecherae
Pathway
sby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H7H31_24500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sby03019
]
H7H31_24500
03009 Ribosome biogenesis [BR:
sby03009
]
H7H31_24500
Enzymes [BR:
sby01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H7H31_24500
Messenger RNA biogenesis [BR:
sby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H7H31_24500
Ribosome biogenesis [BR:
sby03009
]
Prokaryotic type
rRNA processing factors
H7H31_24500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
Motif
Other DBs
NCBI-ProteinID:
QNJ42531
LinkDB
All DBs
Position
6199019..6203407
Genome browser
AA seq
1462 aa
AA seq
DB search
MLEPIEPHESTQAQQVAESADRPGAEGPLGDSPSGTLPPRRRRRAASRPAGPPVAKADTA
ALSGDDAASTELASAAPAAASVAAVAASGAADEPRATAADTLASDTGEAGDTEAAPRGRT
RRRATRKATAPAGAPAATEAAAQPEPVAAAAPVATAADADEAAAGADEAAAEESAPRARS
RRRATRKATAPAGAPQRAADEAPADEEEEEPVAEQAPAAALAQPEPAAAAAAATTADAGA
DEAAAEESAPRARSRRRATRKATAPAGPARGVETPAAEVAADHAAAPEPAAEAVSETSTE
AGAEPAAEAEPAPRSRTRRRAVRRTATAEPQETAADEREAAAEPAPATRRTRQRAASEPA
APAASAPEAAAEPRAAETTNTTPTQEPVRGRRRAVRPPTAVFQAPVFAEPMFQTPETAAA
AAAAAGRQDDGYEEEEPAAERATTSSRRRRRRRAVEDEPAAERAVPETRAPSEAGQPATE
PADEADEALADGAAEPEHDAEAEDEGGDRPSRRRRRGGRRRRRGEALDAEGADEHADGER
ADQPEQAEHAEQASAPEPADEEQHAEDDEPGEDDATGGGSSSSRRRRRRRRRSGDGADAT
GGDDPERTVVKIREPRERRAKDVEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIIT
EAEFLARREAVERVMVVRQSGERTQIGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVL
PSMEAAFVDIGKGRNAVLYAGEVNFEALGMGHGPRRIETALKSGQSVLVQVTKDPIGHKG
ARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQILKKIVPEDAGVIVRTAAEGA
SEDELTRDVARLQAQWEEIQQKAKNGGSSHAPTLLYGEPDMTVRVVRDIFNEDFSKVIVS
GDGAWETIHGYVSHVAPDLADRLQKWTSDVDVFATYRIDEQLMKALDRKVWLPSGGSLVI
DRTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVL
ESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSESCVHCNGRGV
LVHMDQPTSVGGGGGGKRGKKKKGGADQHEHVHVPAEAERPAIQPVPAETAPAPVAEPVE
PAVAEAEEEWFGSAAEAQAAAESGRGSAASRRGRRRASRKASAPAGSPRQAEVSVDEQVA
PPAAETPAPAVAPAPAEPTPAAAEPVAEPAAQPIPEPAAQSVPEPVAQPTPEPAAPAAPP
RARRRVTRKVTAPAGSPADAEAAVVVVGPSGTDRVADETPAEPVAEPAVAGTPEPVAAPD
ALVEAAEEEAASEEAAPVAKKAARKAPAKKTAAKKATAKKTAAKKVPAKKAAAKKAEPEA
AASDAAEAEDAAAPEADEPTTAKKATAKKTAAKKAPASKAAAKKAPAKKAATKKATAKKT
ATKKTAAAEQSPASAVSATTED
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccaattgagccccacgaatccacgcaggcccagcaggtggccgaatcggcc
gaccggcccggcgccgagggcccgctgggggacagccccagcggcaccctgccgccgcgc
cgccggcgccgcgccgcctcccggcccgccggcccgccggtcgcgaaggccgacaccgcc
gcgctgagcggcgacgacgcggcgtccacggagctggcgtcggccgccccggccgccgcc
tccgtagccgccgtcgcggcctccggcgccgccgacgagccgcgcgccaccgccgccgac
acccttgcctccgacaccggtgaggccggcgacacggaggccgccccgcgcggccgtacc
cgccgccgggccacccgcaaggccaccgccccggccggcgcgcccgccgccaccgaggcc
gccgcccagcccgagccggtcgccgctgccgcccccgtcgcgaccgctgccgacgccgac
gaggccgctgccggcgccgacgaggccgccgccgaggagtccgcgccgcgcgcccgcagc
cgtcgccgcgcgacccgtaaggccaccgccccggccggcgccccgcagcgcgccgccgac
gaggcgcccgcggacgaggaagaggaggagccggtggccgagcaggccccggccgccgcc
ctcgcccagcccgagcccgccgccgctgccgccgccgcgaccactgccgacgccggcgcc
gacgaggccgccgccgaggagtccgcgccgcgcgcccgcagccgccgccgcgcgacccgt
aaggccaccgccccggccggccccgcgcggggcgtcgagacgcccgccgccgaggtggcc
gccgaccacgccgccgccccggagccggctgccgaagccgtgtccgagacctccaccgaa
gccggcgccgagccggcggcggaggccgagccggcgccgaggtcgcgcacccggcgccgc
gccgtgcgcaggacggccaccgccgagccgcaggagacggccgccgacgagcgggaggcc
gcggcggagcccgcgcccgcgacgcggcgcacccgccagcgggccgccagcgagccggcc
gcgcccgccgcgagcgccccggaggccgcggccgagccgcgggccgccgagaccaccaac
accaccccgacccaggagccggtgcgggggcggcggcgtgccgtgcgcccgccgaccgcc
gtcttccaggcgccggtcttcgccgagccgatgttccagaccccggagaccgcggcggca
gccgccgcggctgccggacgacaggacgacgggtacgaggaggaggagcccgccgcggag
cgggccaccaccagcagccggcgccgccgccggcgccgggccgtcgaggacgagccggcc
gccgagcgggccgtgcccgagaccagggccccgagcgaggccggccagcccgcgaccgag
ccggccgacgaggccgacgaggcgctcgccgacggcgccgccgagccggagcacgacgcg
gaggccgaggacgagggcggcgaccgcccctcgcgccgtcgccgtcgcggtggccgccgc
cgtcgccggggcgaggcgctcgacgccgagggcgccgacgagcacgccgatggtgagcga
gccgaccagcccgagcaggccgagcacgcggagcaggcttccgcgcccgagcccgccgac
gaggagcagcacgccgaggacgacgagcccggcgaggacgacgcgacgggcggcggctcc
agcagcagccggcgtcgtcggcgccggcgccggcgcagcggcgacggcgcggacgccacc
ggcggggacgacccggagcgtacggtcgtcaagatccgcgagccgcgcgagcggcgcgcc
aaggacgtcgagccctccgacgaggtgcagtccatcaagggctccacgcgccttgaggcc
aagaagcagcgccgccgcgaaggccgcgagcagggccggcgtcgggtgccgatcatcacc
gaggcggagttcctggcgcgccgcgaggccgtcgagcgcgtgatggtcgtccggcagagc
ggcgagcgcacccagatcggcgtgctggaggacaacgtcctcgtcgagcacttcgtgaac
aaggagcaggccaccagctacgtcggcaacgtgtacctgggcaaggtgcagaacgtgctg
ccgtcgatggaggccgcgttcgtcgacatcggcaagggccgcaacgcggtcctgtacgcc
ggtgaggtgaacttcgaggcgctcggcatgggccacggcccgcgccgcatcgagaccgcg
ctcaagtccggccagtccgtcctggtccaggtcaccaaggacccgatcggccacaagggc
gcccggctgaccagccaggtctcgctgcccggccgctacctggtgtacgtgcccgagggc
tcgatgaccggcatcagccgcaagctcccggacaccgagcgggcgcggctgaagcagatc
ctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgcggccgagggcgcg
agcgaggacgagctgacccgcgacgtcgcccgcctgcaggcgcagtgggaggagatccag
cagaaggcgaagaacggcggcagctcgcacgcccccacgctgctctacggcgagccggac
atgaccgtccgcgtcgtgcgcgacatcttcaacgaggacttctccaaggtcatcgtcagc
ggtgacggcgcgtgggagaccatccacgggtacgtctcgcacgtcgcgcccgacctcgcc
gaccggctccagaagtggacgtcggacgtggacgtgttcgccacgtaccgcatcgacgag
cagctcatgaaggcgctcgaccgcaaggtctggctgcccagcggcggctcgctggtgatc
gaccggaccgaggcgatggtcgtggtcgacgtcaacaccggcaagttcaccggccagggc
ggcaacctggaggagacggtcaccaggaacaacctggaggcggccgaggagatcgtgcgt
cagctccggctgcgcgacctcggcggcatcatcgtgatcgacttcatcgacatggtcctg
gagtccaaccgggacctggtgctgcgccgcctcctggagtgcctgggccgcgaccgtacg
aagcaccaggtggccgaggtgacctcgctgggcctggtgcagatgacccgcaagcgcgtc
gggcaggggctcctggagtccttctccgaatcgtgcgtgcactgcaacgggcgcggcgtc
ctggtccacatggaccagccgacctccgtcggtggcgggggcggcggcaagcgcggcaag
aagaagaagggcggcgccgaccagcacgagcacgtccacgtgccggccgaggccgagcgc
ccggcgatccagcccgtgccggccgagaccgccccggccccggtggcggagcccgtcgag
ccggccgtcgccgaggcggaggaggagtggttcggcagcgccgccgaggcgcaggccgcc
gccgagtcgggacgcggttcggccgcctcgcgccgcggtcgccggcgcgccagccgcaag
gcgtcggcccccgcgggctcgccccggcaggccgaggtgagcgtggacgagcaggtcgcc
ccgcccgccgccgagaccccggccccggccgtcgccccggccccggcggagccgaccccg
gctgccgccgagccagtcgccgagccggccgcgcagccgatcccggagccggccgcacag
tcggtcccggagccggtcgcacagccgaccccggagccggccgcgcccgccgcgccgccg
cgcgctcgccgtcgggtgacgcgcaaggtcaccgcgccggccgggtcgccggccgacgcg
gaggcggccgtggtcgtggtcggcccgtccggcacggaccgcgtcgcggacgagacgccg
gccgagcccgtggcggagccggcggtcgccggtacgccggagccggtcgccgcccccgac
gcgctggtcgaggcggcggaggaggaggccgcgtcggaggaggcggccccggtggcgaag
aaggccgccaggaaggctccggccaagaagaccgcggccaagaaggccaccgcgaagaag
acggccgcgaagaaggtcccggccaagaaggcggcggccaagaaggcggagcccgaggcg
gcggcgtccgacgcggccgaggccgaggacgcggcggccccggaggcggacgagccgacg
accgccaagaaggccaccgcgaagaagacggccgccaagaaggccccggccagcaaggca
gccgccaagaaggccccggccaagaaggcggcgaccaagaaggccaccgccaagaagacg
gccaccaagaagaccgccgcggcggagcagtcgcccgcctcggccgtgtcggccaccacg
gaggactga
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