Streptomyces buecherae: H7H31_29350
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Entry
H7H31_29350 CDS
T07050
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sby
Streptomyces buecherae
Pathway
sby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H7H31_29350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sby03019
]
H7H31_29350
Messenger RNA biogenesis [BR:
sby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H7H31_29350
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QNJ43338
LinkDB
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Position
complement(7341589..7343274)
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AA seq
561 aa
AA seq
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MSHPHPELKAAPPLPKGGLRIVALGGLGEIGRNMTVFEHAGKLLIVDCGVLFPEENQPGV
DVILPDFTSIRDRLDDIVAVVLTHGHEDHIGGVPYLLRERADIPVVGSKLTLAFLEAKLK
EHGIRPRTVRVREGDRRGFGPFDCEFVAVNHSIPDGLAVAIRTGAGMVLHTGDFKMDQFP
LDDRITDLRAFARLGEEGVDLFLTDSTNAEVPGFTTSERDLNPAIEQVLRTAPRRVIVSS
FASHVHRIQQVLDAAHQHGRKVAFVGRSMVRNMGIARELGYLQVPPGLVVSTKELESLPD
HQITLVCTGSQGEPMAALSRMANRDHMIRIGEGDTVLLASSLIPGNETAIYRVINGLTRW
GAHVVHKGNAKVHVSGHASAGELVYCYNIVKPRHVMPVHGEWKHLRANADLAIRTGVAPD
RVVIAEDGVVVDLVNGRASITGKVPAGNVYVDGMTVGGATEASLKDRVTLAAEGVVTVVA
IVDADTGALTEPPDFLARGFVHDDATFEPVIPVIEKTLAKAAEEGVGDAHQLEQLVARAV
ANWAFRTYRRKPLIIPVIIDA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagccatccgcatcccgaactcaaagccgctccaccgctgcccaaaggggggctgagg
atcgtcgctctgggcggtctcggtgagatcggccgcaacatgaccgtcttcgagcacgcc
ggcaagctcctgatcgtcgactgtggcgtgctgttccccgaagagaaccagcccggggtg
gacgtgatcctccccgacttcacctcgatccgggaccgcctggacgacatcgtggccgtg
gtgctgacccacggccacgaggaccacatcggcggcgtgccgtacctgctgcgggagcgg
gcggacatccccgtggtcggctccaagctgacgctcgcgttcctggaggccaagctcaag
gagcacggcatccggccccgtacggtacgggtgcgcgagggtgaccggcgcggcttcggc
cccttcgactgcgagttcgtcgcggtcaaccactccatcccggacggcctggcggtggcg
atccgcaccggcgccggcatggtgctgcacaccggcgacttcaagatggaccagttcccg
ctggacgaccggatcaccgatctgcgcgccttcgcccgactgggtgaggagggcgtcgac
ctcttcctcaccgactccaccaacgccgaggtgcccggcttcacgacctccgaacgcgat
ctgaacccggcgatcgagcaggttctgcgcaccgccccgcggcgggtcatcgtctccagc
ttcgccagccacgtccaccgcatccagcaggtcctggacgccgcccaccagcacggccgc
aaggtcgccttcgtgggccggtccatggtccgcaacatgggcatcgcccgcgaactcggc
tacctccaggtcccgcccggcctggtggtgagcaccaaggagctggagtcccttccggac
caccagatcaccctggtgtgcaccgggtcccagggtgagccgatggccgcgctctcccgc
atggccaaccgcgaccacatgatccgcatcggcgagggggacaccgtcctgctcgccagt
tccctgatccccggcaacgagaccgccatctaccgggtgatcaacgggctgacccggtgg
ggcgcgcacgtcgtccacaagggcaacgccaaggtgcacgtctcgggccacgccagcgcg
ggcgagctggtgtactgctacaacatcgtcaagccgcggcacgtgatgcccgtgcacggc
gagtggaagcacctgcgggccaacgccgacctggccatccgtaccggcgtcgcgcccgac
cgcgtcgtcatcgcggaggacggcgtcgtggtcgacctggtcaacggccgcgcctcgatc
accggcaaggtgcccgccggcaacgtgtacgtggacggcatgacggtcggcggcgccacc
gaggcgtccctcaaggaccgggtcaccctcgcggcggagggcgtggtcaccgtcgtggcg
atcgtcgacgccgacacgggcgccctcaccgagccgcccgacttcctggcccgcggcttc
gtccacgacgacgccaccttcgagccggtcatccccgtgatcgagaagaccctggccaag
gcggccgaggagggcgtcggagacgcgcaccagctcgaacaactcgtcgcccgtgccgtg
gccaactgggccttccgcacctaccgccgcaagccgctgatcatccccgtcatcatcgac
gcctga
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