Salmonella bongori N268-08: A464_1918
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Entry
A464_1918 CDS
T02733
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sbz
Salmonella bongori N268-08
Brite
KEGG Orthology (KO) [BR:
sbz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbz03016
]
A464_1918
Enzymes [BR:
sbz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
A464_1918
Transfer RNA biogenesis [BR:
sbz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A464_1918
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AGR59103
UniProt:
S5MWR1
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All DBs
Position
complement(1916666..1917781)
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AA seq
371 aa
AA seq
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MIETDDALASLCAAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGAHVALIDPIGITDWS
PLKAVLRDAGITKFLHAGSEDLEVFLKAFGELPEPLIDTQILAAFCGRPLSWGFASMVEE
YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR
LMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQLLADWRLRKARERDMAVNFVVREENL
WAVARYMPGSLGELDSLGLSGSEIRFHGKTLISLVAKAQALPEEALPEPLLNLMDMPGYR
KAFKAIKALVADVSAAHHVSGELLASRRQINQLLNWHWKLKPQNGLPELVSGWRANLMAE
KLTSLLLEYPR
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaacggacgacgcgctggcgagcctgtgtgcagctgtccgcgcatgtccggct
attgctttagatactgaatttgtccgtacccgtacctattatccgcagttaggattgatc
cagttatttgatggcgcgcatgtcgctctgatcgatccgatcggcatcaccgactggtcg
ccgttaaaagcggtgctacgagatgctggaatcaccaaatttcttcatgcgggcagcgaa
gatctggaagtgtttctgaaggcgtttggcgaactgccggaaccattgattgatacgcaa
attctggcggcattttgcggccgtccattatcgtggggctttgcatcaatggtggaagag
tacacgggcgtggcgctggataaaagcgagtcccgtaccgactggctggcccggccttta
agcgaacgccagtgcgaatatgcggcggcggatgtctggtatctgttaccgattgccaaa
aaattgatgattgaaactgaagctgcaggatggctgcctgctgcgcttgatgaatgtcgg
ttgatgcagcagcgccgtcaggagatccaggcgccggaggaggcatggcgggatatcacc
aatgcctggcaactgcgtactcgccagttggcctgcctgcaacttttagctgactggcgg
ctgcgtaaggcgcgcgaacgcgatatggcggtaaactttgttgtgcgtgaagaaaatctg
tgggcggtcgcgcgttatatgccagggagtctcggcgaactggatagcctggggctttcc
ggcagcgaaattcgttttcatggtaaaacgctgatatcgctggtggcgaaagcgcaggcg
ctgccggaagaggcgttgccggaaccactgttgaatctgatggacatgccgggctatcga
aaagcgtttaaggccatcaaagcgctggtggccgacgtcagtgcggcgcatcatgtgagt
ggcgagctactggcatcacgtcggcagattaaccagttacttaactggcactggaaatta
aagccgcaaaacggactgccggaattggtctccggctggcgggccaatctgatggcggaa
aagctaacgagtctgttactggagtatccgcgttaa
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