Salmonella bongori N268-08: A464_4014
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Entry
A464_4014 CDS
T02733
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sbz
Salmonella bongori N268-08
Pathway
sbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A464_4014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbz03019
]
A464_4014
03400 DNA repair and recombination proteins [BR:
sbz03400
]
A464_4014
Enzymes [BR:
sbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A464_4014
Messenger RNA biogenesis [BR:
sbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A464_4014
DNA repair and recombination proteins [BR:
sbz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A464_4014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AGR61198
UniProt:
S5N2F8
LinkDB
All DBs
Position
4006047..4007876
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AA seq
609 aa
AA seq
DB search
MAQAEVLNLESGAKRVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIP
ALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLY
IAPERLMLDNFLDHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMAL
TATADDTTRLDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLNDAQIAL
STIGRVNQRFGMGYVVEVIRGANNQRIRDFGHDKLKVYGMGREKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTDAARPVLRGDVPLKLAVPRIVALKPRVMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKEFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggagtcaggggctaaacgggttttgcaggaaacc
tttggctaccaacagtttcgcccgggccaggaagcgattattgataccgcgctctccggt
cgcgactgcctggtcgtcatgcccaccgggggcgggaaatccctgtgttaccaaatcccc
gcattgttgctggacgggttgaccgtcgtcgtttcgccgttgatctcgttgatgaaagat
caggtcgatcaattgctggcgaacggcgtggcggcagcatgtctgaactccacccaaagt
cgcgagcagcagcttgaggtgatggcggggtgccgtaccggacagattcgtctgctgtat
attgcgccggaacgtctgatgctggacaactttctcgatcatctggcgcactggaatccg
gttttgttagccgtagatgaagcgcactgtatctcgcagtgggggcatgacttccgtccg
gaatatgcggctctcggacagcttcgccagcgttttcccgctttgccatttatggcattg
accgccaccgccgacgacaccacgcgcctggatattattcgcctgcttggacttaacgat
ccattaatccagatcagtagttttgaccggccgaatatccgctatatgctgatggagaaa
tttaagccgctcgaccagctcatgcgctatgtccaggaacaacgcggtaagtccggtatc
atctactgtaacagccgggcgaaagtggaagataccgctgcgcgcctgcaaagccgcggc
attagcgcggcggcgtatcatgcggggctcgaaaacgctattcgcgccgatgtgcaggaa
aaatttcagcgcgacgatctgcaaatcgtggtcgcgaccgtcgctttcggaatggggatt
aataaacctaacgtacgtttcgtcgtgcatttcgatatcccgcgtaatattgaatcctac
tatcaggaaacgggccgcgccggacgcgacggactgcctgcggaagccatgctattttac
gatccggctgatatggcctggctacgtcgttgtctggaagagaaaccagccggacagctt
caggatattgaacggcataaactgaatgcgatgggtgccttcgccgaagcgcaaacttgt
cgtcgcctggtgctgctgaactatttcggtgaaggacgtcaggaaccgtgtggtaactgc
gatatctgtctcgatccacctaaacaatacgatggcttaaacgatgcgcaaattgcgctt
tctaccattggccgggttaaccagcgttttggcatgggctacgtggtggaggtgatccgc
ggcgcgaataaccagcgcatccgcgattttggccatgataaactcaaggtatatggcatg
ggtcgcgaaaagagccatgagcactgggtaagcgtgattcgccagcttattcatctgggt
ctggtgacgcaaaatattgcgcagcactccgcgttacaactgacggatgccgcgcgtccg
gtactgcgtggagacgttccgctgaagctcgctgtgccgcgcatcgtcgccctcaaaccc
cgcgtgatgcagaagtcgttcggcggtaattacgatcgcaaattattcgctaagttgcgc
aaactgcgtaaagccattgctgatgaagagaatatcccgccgtatgtggtctttaacgac
gccacattgatagagatggcggaacagatgcccgtttccgccagcgagatgttgagcgtt
aacggggttgggatgcgcaaactggagcgttttggcaaagaattcatggcgctcatccgc
gcgcatgtcgatggtgatgacgaagagtag
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