Salmonella bongori N268-08: A464_4373
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Entry
A464_4373 CDS
T02733
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sbz
Salmonella bongori N268-08
Pathway
sbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A464_4373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbz03019
]
A464_4373
03016 Transfer RNA biogenesis [BR:
sbz03016
]
A464_4373
Enzymes [BR:
sbz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A464_4373
Messenger RNA biogenesis [BR:
sbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A464_4373
Transfer RNA biogenesis [BR:
sbz03016
]
Prokaryotic type
tRNA degradation factors
A464_4373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
MetOD2
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AGR61555
UniProt:
S5NG43
LinkDB
All DBs
Position
4431526..4433970
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AA seq
814 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQA
VEQQIAGLKEEVPEEAKAGRVDLRELPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGNKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNIFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGESKNAGKRRQVGKKVNFEPDSAFRGEKKGKAKPKA
DKKSDKKVKKPSDKTRKIAAATKAKRAAKKKAAE
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgcgaatcctatcccgagc
cgggaatttatccttgaacatttaacgaaacgtgaaaaaccggccagtcgcgaagaactg
gccgtagaactgaatattgaaggtgaagagcagattgaagctctgcgccgccgcctgcgc
gcgatggagcgtgacggacaactggtctttacgcgtcgtcagtgctacgcgctgccggaa
cgcctcgacctgctgaaaggcaccgttattggccatcgtgatggctacggtttcctgcgc
gttgaagggcgtaaagatgatttatacctgtccagcgagcagatgaaaacctgtattcat
ggcgatcaggtgctggcgcagccgttgggtgccgatcgtaaagggcgtcgtgaggcgcgt
atcgttcgtgttctggtgccgaaaaccagccagattgttggccgttactttaccgacgca
ggtgtgggtttcgtggtgcctgacgacagccgtctaagctttgacatcctgatcccgccg
gaagaggtgatgggcgcgcggatgggcttcgtggtagtcgtagaactgacccaacgtcca
acccgccgcaccaaagcggtggggaaaatcgtcgaagtactgggcgacaacatgggtaca
ggtatggcggtagatatggcgctgcgcacccatgaaattccttacatctggccgcaggcg
gtagagcaacagatcgccggactgaaagaagaggtgccggaagaggcaaaagcaggtcgt
gtcgatctgcgcgagctgccgctggtcaccattgatggcgaagatgcccgtgattttgac
gacgcagtctattgtgagaaaaaacgcggcggcggctggcgtttgtgggtcgctattgct
gacgtgagctattatgtccgtccgccaacaccactggatcgtgaggcacgcaatcgtggt
acatcggtttacttcccgtcacaggttgtgccgatgctgccggaggtgctctccaacggg
ttgtgttcgttgaacccgcaggttgacaggctgtgtatggtctgtgaaatgactatctcg
gcgaaagggcgtttaacgggttacaaattctatgaagcggtgatgagctctcatgcccgt
ctgacctataccaaagtctggcatatgctgcagggcgaccaggatctgcgtgaacaatat
gcgccactggtgaagcatatcgaagagctgcacaacctctacaaagtactggataaagcg
cgtgaagagcgtggcggtatctcgtttgaaagcgaagaggcgaagtttattttcaacgct
gaacgccgtattgaacgtatcgaacagactcagcgtaacgacgcgcataagcttatcgaa
gagtgcatgattatggcgaatatctcggcggcgcgttttgtcgagaaagccaaagagccc
gccctgttccgtattcatgataagcccaccaccgaagcaattacctcattccgctccgta
ctggcggagctggggctggagcttccgggcggaaataaaccggaaccgcgcgattatgcc
gaactgcttgaatcaattgccgacagaccggacgccgaaatgctgcaaacgatgctgctg
cgttcaatgaagcaggccatttacgatccggaaaaccgcgggcactttggtctggcgttg
cagtcttatgcgcactttacctcgccgattcgccgttacccggacctctctttgcaccgt
gccattaagtacctgctggcgaaagagcaaggaaacaagggcaacactaccgaaacgggc
ggttaccactattcaatggaagagatgttgcagctcggccagcactgttcgatggcggaa
cgccgcgctgatgaagcgacacgcgacgtcgctgactggctgaagtgtgactttatgctc
gatcaggtaggcaatatctttaaaggtgtcattgccagcgtcactggtttcggcttcttt
gtccgtcttgacgaactgtttatcgatgggctggtacatgtttcttcgttggataacgat
tactaccgctttgaccaggttggacaacggttgatcggcgagtccggtggacaaacgtat
cgactgggcgaccgggtcgaagttcgtgtcgaagcggtgaatatggacgagcggaaaatc
gactttagcctgatctccagcgagcgcgcaccgcgtaacgttggcaaaacggcgcgtgaa
aaagcgaaaaaaggcgaaagcaaaaatgccggtaaacgccgccaggtcggtaaaaaagtg
aattttgaaccggacagcgccttccgcggtgagaaaaaaggtaaagcaaagcctaaagcg
gataaaaaaagcgataaaaaagtgaaaaagccgtctgacaaaacgcgtaaaatcgccgcc
gccactaaagccaaacgagcggcgaagaaaaaagccgcggagtaa
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