Staphylococcus carnosus subsp. carnosus: SCA_0153
Help
Entry
SCA_0153 CDS
T00863
Symbol
mfd
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sca
Staphylococcus carnosus subsp. carnosus
Pathway
sca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCA_0153 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sca03400
]
SCA_0153 (mfd)
Enzymes [BR:
sca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCA_0153 (mfd)
DNA repair and recombination proteins [BR:
sca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SCA_0153 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
Glyco_hydro_115
DUF3105
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
CAL27066
UniProt:
B9DLC6
LinkDB
All DBs
Position
154442..157960
Genome browser
AA seq
1172 aa
AA seq
DB search
MKSIITDYINKDKRYEELNDAFGQENVLVTGLSGAVKATMMAEKYLSSDRPLVVVTNNLY
QADKLEADIQQYINDDEIYKYPLQDIMTEEFSTQSPQLMSERVRTLTGLAEGQRGFFIIP
LNGLKKLQTPVDIWQSHQLKLSVGDDIDVDDFLNKLVDMGYRRETAVSHIGEFSLRGGII
DIYPLIGAPVRIELFDTEVDSIRQFDIESQRSEENQETVEITSASDYIITDDVLKRIKTQ
LKEAYENTRPKIDKSVRNDVKDTYESFLQFDSNFVDHQVIRRLVTFMYEQPATLVDYISN
NAIIAVDEYNRVKDTEETLTTEVNDFMTQLIESGKGFIGQQFMNDKAFEELINTRNITYF
TLFTTSMPVKLNNIIKFSSKPVQQFYGQYDIMRSEFQRYVNNGYTVVVLVETETKKERVK
SMMNEMHIPVVEGTAGEHMEGGHAVIVEGSLSEGFELPYMQLAVVTERELFKSKQKKAKK
RTQTMSNAERIKSYQDLKIGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKIQYKGTDQLF
VPVDQMDQVQKYVASEDKTPRLNKLGGTEWKKTKAKVQQSVEDIADELIELYREREMAQG
YQYGADSEQQHEFEMDFPYDLTADQSKSIVEIKDDMEKERPMDRLLCGDVGYGKTEVALR
AAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVNIELMSRFRTPKEVKETKKGLE
DGTVDIVVGTHKLLAKDVKYKDLGLLVVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRGGQAFYLYNKVQ
SIYEKKEQLQMLMPEANIGVAHGRMTERELEDTMIGFVDGEYDILVTTTIIETGVDVPNA
NTLIIEDADRFGLSQLYQLRGRVGRSSRVGYAYFLHPTNKVLSETAEERLQAIKEFTELG
SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETTTPEIEI
DLNMDVYLPTEYIPNEQSKIEIYKKLRQIENEEQLMDIKDELIDRFNEYPIQVERLLDIV
EMRIHALNVGVLHIKDTGKAVEVQLSEKGTEDINGEALFKQTLPLGRDMKVGVEDGAMKV
TLAKNKRAGAWFDRLKFLMKSLEESMVIPDEA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcaataattacagattatataaataaagataaacgatatgaagagttaaacgat
gcatttggtcaagagaatgttttagtaactggcctttcaggtgctgtcaaagcaacgatg
atggcagagaagtatctctcatctgatcgtccgcttgtagtagtcacaaataacctctat
caagcagataagttagaggcagacatacaacaatatattaatgatgatgaaatttacaag
tatccgcttcaagacatcatgactgaagagttttctacccaaagtcctcaattgatgagt
gaacgtgtacgtacccttactggtttagccgaaggacagcgagggttctttatcatacct
ttaaacgggctgaaaaaattacaaacacctgtcgatatctggcagtcacaccaacttaaa
ttatcagtaggtgacgatattgatgttgatgatttccttaataaattagtcgatatgggt
tatcgtcgagaaactgctgtttcgcatatcggagaattctcattacgcggaggtatcatt
gatatttatccgttaatcggcgcacctgtacgtattgagctatttgatacagaagtggat
tcaatccgtcaattcgatatagaatcacaacgttctgaagaaaatcaagagacagtagaa
attacctcagccagtgattatattattacggatgatgtgcttaagcgtatcaaaacacaa
ttaaaagaagcatatgaaaatacacgccctaaaattgataagtcagtacgcaatgacgtt
aaagatacgtacgaaagctttttacaattcgacagcaactttgttgatcaccaagtcatc
cgtcgattagttacttttatgtatgaacagcctgcaacacttgtagactatatcagcaac
aatgcgattatcgctgtagatgaatacaatagagtaaaagatacagaagaaactttaaca
acagaagtcaatgactttatgacgcaattaatcgaaagcggaaaaggttttatcggccag
cagtttatgaatgataaagcttttgaagaacttatcaacacgagaaatattacgtacttc
acacttttcactacgagtatgccggtcaaattaaataacattattaaattctcaagtaaa
cctgttcaacaattttatggacaatatgatattatgcgttcggaatttcaacgttatgtc
aacaacggctatacagtagtcgtcttagttgaaacagaaacgaaaaaagaacgcgttaaa
tcaatgatgaatgagatgcatattccagttgtagaaggtacagcaggagaacatatggaa
ggcggccacgcagtcattgtcgaaggcagtctttcagaaggttttgaactgccgtatatg
caattagctgttgtgacagaacgtgaattattcaagtctaaacagaaaaaagctaaaaaa
cgcacacagacaatgagcaatgcagaacgtattaaatcttatcaagatttaaaaatcgga
gactatgtagtccatgtccatcatggtgtcggtcgttatttaggtgtagaaacacttgaa
gtcggagatgtacatcgcgattacatcaaaatccaatacaaagggacagaccaactattt
gtacctgtcgatcaaatggatcaagtgcagaagtacgttgcttctgaagataaaacaccg
agacttaataaacttggcggtacggaatggaagaaaacgaaagctaaagttcaacaaagt
gttgaagatatcgcagatgaattgattgagctgtatcgtgaacgtgaaatggcacaaggt
tatcaatatggcgcagattctgaacaacaacatgaatttgaaatggacttcccatatgat
ttaacagcagaccaaagtaaatctatagtagaaatcaaagatgacatggaaaaagaacgt
cctatggatcgtctgctttgcggtgatgtgggttatggtaaaacagaagttgccctgcgt
gctgcttttaaagctgtaatggaaggcaaacaagtggctttcttggttccgacaactatc
ttagcacagcaacactatgaaacattaatcgaacgtatgcaagatttcccggtaaatatt
gagttgatgagtcgttttcgtacaccgaaagaagttaaagaaactaaaaaaggtttggaa
gacggtacagtcgacattgtcgtagggacacataaactcttagctaaagatgtgaagtat
aaagatttaggattgcttgtagtcgatgaagaacaacgttttggcgtaagacataaagaa
cgtattaaatcattgaaaacaaacgttgatgttttgacattgacagcaacaccgattccg
cgtacgttgcatatgagtatgcttggagtacgtgatttatctgttattgaaacaccgccg
gaaaaccgcttcccagtccaaacttatgtcctagaacaaaattcgaatttcatcaaagaa
gcacttgaacgcgaattatcacgcggcggccaagcgttctatttatacaacaaagtacaa
tctatctatgagaagaaagaacaattgcaaatgctgatgcctgaagccaatatcggtgtg
gcacatggtcgtatgacagaacgtgaactagaagatacgatgattggattcgtcgacgga
gaatacgatattttagtcactacaacaattattgaaaccggcgtagacgtgccgaatgcg
aatactttgattattgaagatgcagaccgtttcggtttgagccaattgtatcaattgcgc
ggacgtgtcggccgttcatctcgtgtcggttatgcttacttcttgcatccgacaaacaaa
gtgttgtctgaaacagcagaagaacgtctgcaagctatcaaagagtttacagaactcggc
agcggcttcaaaattgcgatgcgtgatttgaatattcgcggtgccggcaacttgcttggt
aaacagcagcacggctttattgattcagtcggtttcgacttgtactcacaaatgttagaa
gaagcagttaacgaaaaacgcggcatcaaagaagaaacaaccacaccagaaatcgaaatt
gacttgaacatggatgtatatctgccgacagaatatatcccgaatgaacaatctaaaatt
gaaatctataaaaaactccgtcaaattgaaaatgaagagcagttaatggatattaaagat
gaattgattgatcgtttcaatgaatatccaattcaagttgaacgtttgctggatattgtt
gaaatgcgtattcatgcattgaatgtcggtgtactgcatattaaagacactggtaaagca
gttgaagtccaactgtctgaaaaaggtacagaagatattaacggcgaagcattattcaaa
caaaccttgcctttaggacgcgacatgaaagtcggtgttgaagatggtgcaatgaaagtc
acattggctaaaaataaacgcgccggtgcatggttcgatcgtctgaaattcttaatgaaa
tcattggaagaaagtatggttataccggatgaagcgtaa
DBGET
integrated database retrieval system
