Staphylococcus carnosus subsp. carnosus: SCA_0200
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Entry
SCA_0200 CDS
T00863
Symbol
rpoC
Name
(GenBank) RNA polymerase beta-prime chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sca
Staphylococcus carnosus subsp. carnosus
Pathway
sca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCA_0200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sca03021
]
SCA_0200 (rpoC)
03400 DNA repair and recombination proteins [BR:
sca03400
]
SCA_0200 (rpoC)
Enzymes [BR:
sca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCA_0200 (rpoC)
Transcription machinery [BR:
sca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCA_0200 (rpoC)
DNA repair and recombination proteins [BR:
sca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCA_0200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CAL27113
UniProt:
B9DKV1
LinkDB
All DBs
Position
209058..212696
Genome browser
AA seq
1212 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEEVIYFASYVVVDPGPTGLEKKSLLSEAEYREYYDKYPGQFVAKMGAEGIKDLLS
EIDLDEELKELRTELESATGQRLTRAIKRLEVVESFRNSGNDPSWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERMEDEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGAIFNNTNEVLKAYQNGYVHLHTRIGLH
AGSLNNPTFTEEQNNKILTTSVGKVIFNEIIPDSFAYINEPTQSNLEDKTPDKYFVSATE
LGEGGLKEYFAEQELVEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKYSSKAGI
TVGVSDIIVLPDKQEILDEHEKLVERVQKQYNRGLITEDERYNAVIEIWTDAKDEIQSRL
MKSLDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIEMPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETVRHPETDEVLVEPDQLITPEIAKRITDAGIEQMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITDIEGTVEDIKLAKDRQQEIVIKGANETRSYLASGTSRLKVEKGQ
HVERGEVLTEGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHNFTDANREAFKERKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDAKYEKHVDPMVEEA
IEEIAATDTPQQ
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataatttccattatatgaaaatcggccttgcttcacctgaaaagatt
cgttcttggtcatatggtgaggttaagaaacctgaaactatcaactatcgtactttaaaa
cctgaaaaagatggtttgttctgtgaaagaattttcggacctacaaaagattgggaatgt
agttgcggtaaatataaacgtgttcgttataaaggcatggtttgtgaccgttgtggtgtt
gaagtaactaaatctaaagtacgtcgtgaaagaatggggcatattgaacttgcagctcct
gtttcacacatttggtacttcaaaggcattccaagtcgtatgggactattattagatatg
tctcctagatcattagaagaagttatttattttgcttcttatgtggttgtagatccaggt
ccaacaggacttgagaaaaaatcattgctttctgaagcagaatacagagaatactatgat
aaatatcctggtcaattcgttgctaaaatgggtgctgaaggtatcaaagatttactatca
gaaatcgatttagatgaagaattgaaagaattgcgtactgagttagaatcagctactggt
caaagattgacacgtgcaattaaacgtttagaagtagttgaatcattcagaaactcaggt
aacgatccttcatggatgattttggatgtacttccaattattcctccagaaatccgtcca
atggttcaattagacggtggtcgttttgcaacaagtgacttgaatgacttatatcgtcgt
gttatcaaccgtaacaatcgtttgaaacgtttattggacttaggtgctcctggcatcatt
gttcaaaacgaaaaacgtatgttgcaagaagcagttgatgctttaatcgataacggtcgt
cgtggtcgtccagttactggtccaggtaaccgtccattaaaatcactttcacatatgttg
aaaggtaaacaaggacgtttccgtcaaaacttattaggtaaacgtgttgactattctgga
cgttcagttatcgcagtaggaccaagcttaaaaatgtatcaatgtggtctgcctaaagaa
atggcgttagaattattcaaacctttcgttatgaaagaattagttcaacgcgaaattgca
acaaatattaaaaatgcaaaaagtaaaattgaacgtatggaagatgaagtatgggatgtt
ttagaagatgttatcaaagaacacccagttctattgaaccgtgcgcctacattgcataga
ttaggtatccaagctttcgaaccgacattggttgaaggccgtgccatccgtttacaccca
ttggtaacaacagcatataacgctgactttgatggtgaccaaatggcggtacacgtacct
ttatctaaagaagcacaagcagaagcacgtatgttgatgcttgcagctcaaaacatcttg
aaccctaaagatggtaaaccagtagttacgccatcacaagatatggtattaggtaactat
taccttactttagaacgtaaagatgcagtgaatactggagcaatctttaataacacaaat
gaagtcttaaaagcataccaaaacggttatgttcacttacacactcgtatcggacttcat
gctggttcattaaataacccaacattcactgaagaacaaaacaataaaattcttactact
tcagttggtaaagtaattttcaatgaaatcattccagattcatttgcttatattaacgaa
ccaacacaatcaaacttagaagataaaacacctgataaatatttcgtaagtgctactgaa
cttggcgaaggcggcttgaaagagtactttgctgaacaagaattagtagaaccatttaac
aaaaaattcttaggaaatattatcgcagaagtcttcaaccgctttagcattacagatact
tctatgatgcttgaccgtatgaaagacttaggtttcaaatattcttctaaagcaggtatt
actgttggtgtatctgacatcatcgtattaccagataaacaagaaattttagatgaacat
gaaaaattagtagaacgtgttcaaaaacaatataatcgtggtttaatcactgaagatgaa
cgttataatgctgtcattgaaatttggacagatgctaaggatgaaattcaaagcagattg
atgaaatccctagataaaactaacccaatcttcatgatgagtgattctggtgcccgtggt
aacgcatctaactttactcagttagccggtatgcgtggtttaatggctgcaccatcaggt
aaaattatcgaaatgccgatcacatcttcattccgtgaaggtttaacagtattagaatac
tttatctctactcacggtgcgcgtaaaggtcttgccgatacagcacttaaaactgccgat
tcaggttaccttacacgtcgtttggttgacgttgctcaagacgttattgttcgtgaagaa
gattgcggaactgaccgtggcttacttgtttctgatatcaaagaaggtacagaaatgatc
gaaccatttatcgaacgtattgaaggacgttattctaaagaaactgtacgtcatcctgaa
acagatgaagtattagttgaaccagaccaattaatcacaccagaaattgcaaaacgtatt
acagatgctggtattgagcaaatgtatatccgttcagcatttacatgtaacacacgtcat
ggtgtttgtgaaaaatgttatggtaaaaaccttgcaactggtgaaaaagttgaagttggt
gaagcagtcggtacaatcgctgcacaatcaatcggtgaacctggtacacagcttacaatg
cgtacattccatacaggtggggtagccggaagcgatattacacaaggtcttccacgtatc
caagaaatcttcgaagcacgtaaccctaaaggtcaagcagtaattactgacattgaaggt
actgttgaagatattaaacttgcgaaagaccgtcaacaagaaatcgtgattaaaggtgca
aatgaaacaagatcttatcttgcttcaggtacttcacgcttgaaagttgaaaaaggacaa
catgttgaacgcggtgaagtcttaactgaaggttcaatcgaacctaagaactatttatca
gtagctggtttaaatgcaacagaaagctacttgcttaaagaagttcaaaaagtttaccgt
atgcaaggtgttgaaatcgatgataaacacgttgaggtaatggtacgtcaaatgttacgt
aaagttcgtattatcgaagctggtgacactaaattattaccaggttcacttgtggacatc
cacaactttacagatgcgaaccgtgaagcattcaaagagcgtaaacgcccagcaactgct
aaaccagtattgcttggtattactaaagcgtctcttgaaacagaaagcttcttgtctgct
gcatcattccaagaaacaactcgtgttcttacagatgctgcaatcaaaggtaaacgtgat
gacttactaggacttaaagaaaacgttattatcggtaaattaattccagctggtacaggc
atgagacgttatagcgatgctaaatacgaaaaacatgtcgatcctatggtggaagaagca
attgaagaaattgctgcaactgatacaccacaacaataa
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integrated database retrieval system
