Staphylococcus carnosus subsp. carnosus: SCA_0713
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Entry
SCA_0713 CDS
T00863
Name
(GenBank) putative hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sca
Staphylococcus carnosus subsp. carnosus
Pathway
sca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCA_0713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sca03019
]
SCA_0713
Messenger RNA biogenesis [BR:
sca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCA_0713
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CAL27624
UniProt:
B9DQ09
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All DBs
Position
complement(716428..718380)
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AA seq
650 aa
AA seq
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MKQLKNNEVGVYALGGLGEVGKNTYAVEYKDEIVLIDAGIKFPDDNLLGIDYVIPDYSYL
VQNKDKIIGLFITHGHEDHIGGVPFLLKELNIPIYGGPLALGLIRNKLEEHHLLRTAELN
EINEDTEINSKYFNISFYLTTHSIPEAYGVVVDTPEGKIVHTGDFKFDFTPVGTLANIAK
MAKIGEEGVLCLLSDSTNALVPNFTLSEREVGQNVDKIFRKCTGRIIFATFASNIYRVQQ
AVEAAVKYNRKIVVFGRSMENNIKIGMELGYIKAPPETFIEPNKINSVPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYRAGADVIHSKI
SNIHTSGHGSQGDQQLMLRLIRPKFFMPIHGEYRMLKAHSQTGVQCGVEEDNVFIFDNGD
VLALTRDSARKAGRIPSGDVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNTL
LSGPDIISRGFVYMRESGHLIYDAQRKIKTDVISKLNQNKDIQWHQIKSSIIETLQPYLY
EKTARKPMILPVIMKVNEDGEQITKPSKPKSNSKPKKNNKIGNGSNQNNESKNNQGGRPP
KRNNNGRNNQSKNNKPANKKESSSKSGSNSTQKSHSKPKNKPDSKKENKE
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaattaaaaaataatgaagtcggcgtatacgcactcggcggactcggtgaagtc
ggcaagaatacgtatgctgtcgaatataaagatgaaattgtcctgattgatgcagggatt
aaattccctgatgacaatttattagggattgactatgtcatccctgattattcttatctt
gtacaaaataaagataagattatcgggcttttcatcacacatggacatgaagaccatatc
ggcggtgtgcccttcttattaaaagaacttaatataccgatatatggcggtcctttagct
cttggacttatccgtaacaaattggaagaacatcatttgttgagaactgctgagttgaat
gaaatcaatgaagatacagaaattaattctaaatatttcaatatctcattttatctgact
actcacagtattccggaagcttacggtgtagttgtggatactccagaaggtaaaattgtg
catacaggtgatttcaaatttgacttcactcctgtcggcacacttgcgaatattgcaaaa
atggcaaaaatcggagaagaaggcgttttatgtctcctttctgactctaccaatgcattg
gtaccgaatttcactttaagtgaacgcgaagttggacaaaacgttgacaaaattttccgt
aaatgtacaggcagaattatttttgctacattcgcttctaacatttaccgcgtacagcaa
gctgttgaagcagctgttaaatataaccgaaaaattgttgtttttggtcgttcaatggaa
aacaatattaaaatcggtatggagcttggttacattaaagcaccacctgaaacatttatc
gaaccaaataaaatcaattcagtaccaaaacatgaattgttaattttatgtaccggttct
caaggtgagccaatggctgcactttctagaattgcaaatggtacacataaacaaattaaa
attattccagaagatactgttgtattcagttcttcacctatcccaggtaatacaaagagt
attaatcgtacaatcaatgcgttgtatcgtgcgggtgcagatgtaattcatagtaagatt
tctaacatccacacatctggtcacggctctcaaggcgatcagcaattgatgcttcgtttg
attcgtccgaaattctttatgccgattcatggtgaataccgtatgttgaaagcacattct
caaactggtgtgcaatgcggagttgaagaagataatgtgtttatctttgataatggtgat
gtgttggcattaacaagagattctgcacgtaaagcaggacgtattccttcaggagatgtg
ttggtggatggaagcggtattggagacatcggtaatgttgttatccgtgaccgtaaattg
ttatctgaagaaggtttagtgattgttgtagtaagtatcgacttcaatacaaacactcta
ctttcaggtcctgatattatttctcgcggttttgtttatatgcgtgaatcaggtcattta
atttatgatgcacaacgtaaaattaaaacagatgtcatcagtaaattaaaccaaaacaaa
gatatacaatggcatcaaatcaagtcatctattatagaaacattgcaaccttatctttat
gaaaaaacagcacgtaaaccaatgattttaccggtaattatgaaagtaaatgaagatggt
gagcaaattactaaaccatctaaaccgaaatcaaattctaaacctaagaaaaacaacaaa
ataggtaatggttcgaaccaaaataatgaatcaaaaaataaccaaggcggtcgtccacct
aaacgcaataataatggacgcaacaatcaatctaaaaacaataaacccgctaataaaaaa
gaatcaagttctaagtcaggttctaacagtacacaaaaatcacattcaaaacctaaaaat
aaacctgattctaaaaaagaaaataaagaatag
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