Staphylococcus carnosus subsp. carnosus: SCA_1247
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Entry
SCA_1247 CDS
T00863
Name
(GenBank) putative single-strand DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sca
Staphylococcus carnosus subsp. carnosus
Pathway
sca03410
Base excision repair
sca03430
Mismatch repair
sca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SCA_1247
03430 Mismatch repair
SCA_1247
03440 Homologous recombination
SCA_1247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sca03400
]
SCA_1247
DNA repair and recombination proteins [BR:
sca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SCA_1247
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SCA_1247
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCA_1247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CAL28154
UniProt:
B9DNG4
LinkDB
All DBs
Position
complement(1257690..1259966)
Genome browser
AA seq
758 aa
AA seq
DB search
MIKAKFKWDLQQNTNQISDEIASEMKLTPIVRKILESKNITDKQDIEALLKKSTIKHDPY
TMSDMKKAIERINKAIDNHERILIYGDYDADGVTSTTILVSVLQELGAEVGWYIPNRFTE
GYGPNEAAFKNAYDEGINLIITVDNGIQGHHEIKTAQELGMDVILTDHHEIGETLPEAFA
IVHPMHPEFNYPFKYLSGAGVALKIAQALLDHPSPYYTALAAIGTIADLVSLTDENRAIV
QDGLDILNQTQFPSIQALLNNASYKDTITEETIGFVIGPRLNAVGRLDDASLAAELLMSD
NDEEAEFLAEQVEHFNQERKDIVKEISDEAVLMAAEQVENGNQFLVLAQENWHEGVLGIA
ASKVVETFGLPTIILNIDTVQNFAKGSARSIEQVSMYDILDKERTLITKFGGHHMAAGMT
LPIENIEKLREALNVHMAEISKEKDLSPRKKVDLLLDEAEITVKNIRDIQKLRPFGTDFT
SPLFQLNNAKIIQAKGIGQEGKHLKMTIGDSKIQSLYWQHGEYANQIEPNQPINMIGTLQ
INEWNGNQSPQFMVQDMASEALQILDFRGKARQQILANDDLPTAEIVNKKSNKDHEHQYF
YGDTIPEQYERYVFKELPLTIESMQSTLASIVESQIILELNHQNSIYFDGLPHLDKFKAC
YKALLAKNEVNLKQDGMQLCDYLNVKPQVLIFMLKVFNELNFIHDNNGIITVNKDVEKKE
ITSSRLYQASMKRIDVEKFLLYDDFSKVKVWIKEQLAK
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagctaaatttaaatgggacctacaacaaaatacaaatcaaatttctgatgaa
attgcatcagaaatgaaactgacacctattgttcgtaaaattttggagagcaaaaatatt
acggataaacaagatattgaagccttattaaaaaaatctacgattaagcacgatccttat
acaatgagtgatatgaaaaaagcgattgagcgtattaataaagcgattgataatcatgaa
cgtattttaatatatggagattatgatgccgatggtgtgacatcaactactatcttagtt
tctgttttacaggaattaggggctgaagtcggctggtacatacctaatcgttttacagaa
ggttacgggcctaatgaagcggcatttaagaatgcatacgatgaaggtatcaaccttatc
atcactgtggataatggtatacaaggtcatcatgaaattaaaacagcgcaagaattaggg
atggatgtcatactcacagaccaccatgaaattggagaaacattaccagaagctttcgca
atcgttcacccaatgcacccagaatttaactatccttttaaatatttaagcggagcaggt
gtggctttaaaaatagcacaagctttattagatcatccttctccatactacacagcacta
gcagccatcggtacgattgctgatttagtatcattaacagatgaaaaccgcgcaattgtg
caagatggattagatatattaaatcaaacgcaattcccatcaatccaagcgcttttaaat
aatgcaagttataaagatactataactgaagaaacaattggatttgtaattggtccaaga
ttaaatgctgtcggcagattagatgatgcaagtttagcagctgaattattaatgtctgat
aatgatgaagaagcagaatttttagctgagcaagttgaacattttaatcaagaaagaaaa
gatattgtgaaagaaatatctgatgaagctgtattaatggcagctgaacaagtggagaat
ggtaatcagtttcttgttttagcacaagaaaattggcacgaaggtgttttgggtatagcg
gcatctaaggttgttgaaacatttggattaccaacgattatcttaaatattgatactgta
caaaatttcgcaaaagggtcagcgcggagtattgagcaagtttctatgtacgatatttta
gataaagaacgcacattaattaccaaattcggcggtcatcatatggctgcaggaatgact
ttgcctattgaaaatatagagaagctgagagaagccttgaatgtgcatatggctgaaatt
tcaaaagaaaaagatctttctcctcgtaagaaggtagatttacttttagatgaagcggaa
attacggttaaaaacatcagagatattcaaaagttgcgaccttttgggacagattttaca
agtccgctttttcaattgaataatgctaaaattattcaagcaaagggaataggacaagaa
ggcaagcaccttaaaatgaccattggtgattctaaaattcaaagtctttattggcaacat
ggagaatatgcaaatcaaatcgaacctaatcagcccataaatatgattggaactttacaa
atcaatgaatggaatgggaatcaatcacctcaatttatggttcaagacatggcctcagag
gcactgcaaattttagatttcagaggtaaggctagacaacaaattctagcaaatgatgat
ttgcctacagcagaaattgttaacaagaaatcaaataaagatcatgagcaccaatatttt
tatggagatacaattccagaacaatatgagcgctatgtttttaaagaattaccacttaca
atagaatctatgcaatcgacattagcttctattgttgaaagtcaaattattttagagttg
aatcatcaaaactcaatttattttgatggattaccgcatttggataaatttaaagcttgt
tataaagcattgcttgcaaaaaatgaagtgaatttaaaacaggatggaatgcaattatgt
gattacctgaatgttaaaccgcaagtcttaatttttatgcttaaggtctttaatgaattg
aatttcattcatgacaataatggtataataactgtgaacaaagatgtagaaaagaaagaa
attacttctagtcgtctttatcaagcaagtatgaaacgtattgatgtagaaaaattttta
ctttacgatgacttctcaaaagtaaaagtatggataaaagagcagctagcaaagtaa
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