Shewanella carassii: TUM17387_00140
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Entry
TUM17387_00140 CDS
T07543
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
scaa
Shewanella carassii
Pathway
scaa00071
Fatty acid degradation
scaa00280
Valine, leucine and isoleucine degradation
scaa00310
Lysine degradation
scaa00362
Benzoate degradation
scaa00380
Tryptophan metabolism
scaa00410
beta-Alanine metabolism
scaa00640
Propanoate metabolism
scaa00650
Butanoate metabolism
scaa00907
Pinene, camphor and geraniol degradation
scaa00930
Caprolactam degradation
scaa01100
Metabolic pathways
scaa01110
Biosynthesis of secondary metabolites
scaa01120
Microbial metabolism in diverse environments
scaa01200
Carbon metabolism
scaa01212
Fatty acid metabolism
Module
scaa_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
TUM17387_00140 (fadB)
00650 Butanoate metabolism
TUM17387_00140 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
TUM17387_00140 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
TUM17387_00140 (fadB)
00310 Lysine degradation
TUM17387_00140 (fadB)
00380 Tryptophan metabolism
TUM17387_00140 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
TUM17387_00140 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
TUM17387_00140 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
TUM17387_00140 (fadB)
00930 Caprolactam degradation
TUM17387_00140 (fadB)
Enzymes [BR:
scaa01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
TUM17387_00140 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
TUM17387_00140 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
TUM17387_00140 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
TUM17387_00140 (fadB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
BCV64655
LinkDB
All DBs
Position
complement(16857..19007)
Genome browser
AA seq
716 aa
AA seq
DB search
MIYQNSMIQVELLENNIARLCFNAEGSVNKFDRATLTSLDEALDAIKAESSVKALLLTSA
KDAFIVGADITEFLGLFAQEDEVLLSWLQQANAVFNKLEDMPFPTASAINGFALGGGCET
ILATDFRIADTSARIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRPEDALK
VGAVDAVVAPEQLQAAALQMLQDSLAGKLDWQSRRQRKQSPLTLPKLEAMMSFTTAKGMV
FSVAGKHYPAPMAAVNVVEKAAGLGREEALLVEHQAFIQLAKTDVAKALIGIFLNDQLVK
GKAKKAAKQAKNIEQAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQKALDLGLNEAAKLL
TAQVERGRSTPAKMAKVLNNITPSLDYNAVKDANIVVEAVVEHPKVKATVLAEVEQQLAA
DAIIASNTSTISINLLAKSLKDPSRFCGMHFFNPVHKMPLVEVIRGEHSSEETISSVVAY
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLADGADFIAVDKVMEKQFGWPMGPAYL
LDVVGLDTGHHAQAVMAEGFPDRMGKTGKDAIDIMFGHERLGQKNGKGFYQYSVDKRGKP
KKDKDPVSYELLQAEFGELKEFSSDEIIARTMIPMIIETVRCLEEGIVATPAEADMGLVY
GLGFPPFRGGVFRYLDTMGVANFVALADKYAHLGGLYQVTDGMRELAANNGSYYQA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgatctaccaaaattcgatgattcaggttgagttactcgagaataatatcgcccgcctt
tgcttcaatgccgaaggatcggtaaacaaattcgaccgcgccaccctgacttctctggat
gaggcactggacgccatcaaagcagaatccagcgttaaggcacttctgctgacatcggcc
aaagatgcctttattgtcggtgccgacatcactgagttccttgggttgttcgcccaggaa
gatgaagtactcttgtcatggttgcagcaagccaatgcggtattcaacaagctggaagac
atgcctttcccaactgcttctgctatcaatggttttgccctgggcggtggttgcgaaacc
attttggccacagacttccgcattgccgacaccagtgcccgaatcggcctgccggaaacc
aagctggggatcatcccgggattcggtggcacagtgcgcctacccagagtgataggtgca
gacaatgcactggagtggatcaccacaggcaaagaccaacgcccggaagacgctctcaaa
gtcggcgctgtagacgcagtagtggctccagagcagctccaggccgcagcactacagatg
ctacaggactcgctggctggcaaacttgactggcagagccgccgtcaacgtaaacagtcg
ccactgacactgcccaagctggaagccatgatgtcgttcaccacagccaagggcatggtg
ttttccgttgccggcaagcactatccggcaccaatggcggcggttaacgttgtggaaaag
gcagccggtctggggcgcgaagaagccttattggtagaacatcaagcctttattcaactg
gccaaaacagatgtggccaaggcgctgatcggcatcttcctcaatgaccaactggtcaaa
ggcaaagccaagaaggccgccaaacaagccaagaacattgaacaagccgcggtattaggc
gcaggcattatgggcggcggtatcgcctaccaaagtgccagcaagggtacgccgattgtg
atgaaggacatagcgcagaaggcgctggatctcggccttaacgaagcggccaagctactg
acggcccaggtagagcgtggtcgctccaccccggccaagatggccaaagtgctcaataac
atcaccccatcgctcgactacaacgccgtcaaagacgccaatatagtagtagaagcggta
gtagaacatcccaaggttaaggcgactgtgttggccgaagtcgagcagcagctagctgcc
gatgccatcatagcgtccaacacctcaaccatctcgattaacctgcttgctaagagtctg
aaagacccttcccgcttctgcggtatgcacttcttcaaccccgtgcacaagatgccactg
gtggaagtgatccgtggcgaacacagctcggaagaaaccatctcctctgtagtggcctat
gccagcaagatgggtaagacgcctatagtggtcaacgactgccccggcttctttgttaac
cgggtactcttcccctatttcgccggttttaacggcctgctggccgatggtgcagacttt
atcgccgtcgacaaggtgatggagaaacagtttggttggcctatgggcccggcttatctg
ctggatgtagtcggtttggatacaggccatcacgcccaggccgtcatggccgaaggcttc
ccggaccgtatgggcaaaacaggcaaagacgccatagatatcatgtttggccatgaacgc
ctggggcagaagaacggtaaaggtttctaccagtattctgtggataagcgtggtaagccg
aagaaagacaaggatcctgtcagctacgaattactgcaggccgaattcggtgaactcaaa
gagttcagtagcgatgaaatcatcgcccgcaccatgatccccatgattatagaaaccgta
cgttgcctggaagaaggcatagtcgccaccccggccgaagccgacatgggtctggtatat
ggtcttggcttcccaccattcagaggcggtgtgttccgctatctggataccatgggcgtt
gccaactttgtcgccctggctgacaaatacgcccacctggggggactctaccaggtgacc
gatggcatgcgtgaactggcagccaacaacggttcttactatcaggcctaa
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