Shewanella carassii: TUM17387_00480
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Entry
TUM17387_00480 CDS
T07543
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
scaa
Shewanella carassii
Pathway
scaa03030
DNA replication
scaa03410
Base excision repair
scaa03420
Nucleotide excision repair
scaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TUM17387_00480 (polA)
03410 Base excision repair
TUM17387_00480 (polA)
03420 Nucleotide excision repair
TUM17387_00480 (polA)
03440 Homologous recombination
TUM17387_00480 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scaa03032
]
TUM17387_00480 (polA)
03400 DNA repair and recombination proteins [BR:
scaa03400
]
TUM17387_00480 (polA)
Enzymes [BR:
scaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TUM17387_00480 (polA)
DNA replication proteins [BR:
scaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TUM17387_00480 (polA)
DNA repair and recombination proteins [BR:
scaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
TUM17387_00480 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TUM17387_00480 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
K-box
Motif
Other DBs
NCBI-ProteinID:
BCV64689
LinkDB
All DBs
Position
complement(56884..59619)
Genome browser
AA seq
911 aa
AA seq
DB search
MDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLGKYKPHQMAVVFDAKGPTFRN
EMYAEYKAHRPPMPDDLRNQIAPLHAIIEALGLPLLCIPGVEADDVIGTLASRASKEGRA
ILISTGDKDMAQLVDDNVTLINTMTDTIMGPEEVTSKFGVGPELIIDLLALMGDKADNIP
GLPGVGEKTALAMLTGAGGVAKLLQQPDCVTELGFRGAKTMAKKIIDNAEMLQLSYDLAT
IKTDCELDLDWHQLNITEPNKDQLAQLYGEMEFKRWLAEVLDNKIPHPLAVKTATAETQE
ETAAPATIETEYETILTEAALEKWLKKLAEAELMAVDTETTSLNYMDAKLVGLSFAVKAG
EAVYLPLGHDYPGAPEQLPREKVLAKLKPILENPEIKKVGQNLKYDISILANAGIKLAGV
AFDTMLESYVFNSVASRHDMDGLALKYLGHKCVSFEEIAGKGAKQLTFNQIPLETASPYA
AEDADITLRLHQHLWPRLEREQELAKVFTELELPLIQVLSQMERDGVLIDSMQLSQQSDE
LAQKIDALEQKAYEIAGEKFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLIELA
LDYPLPKIILEHRSLTKLKSTYTDKLPLMINGKTGRVHTSYHQANAATGRLSSSDPNLQN
IPIRTEEGRRIRQAFIAPSGRKILAADYSQIELRIMAHLSQDAGLLAAFAEGKDIHRATA
AEVFDVAFETVTPEQRRRAKAVNFGLIYGMSAFGLARQLDIPRTEAQSYMDTYFKRYPGV
LKYMEETRALAAEQGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADIIKK
AMIKVANWIAADTKGEITMIMQVHDELVFEVDAAKAEELQQQICKLMAEAATLDVPLLAE
AGLGDSWDQAH
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
gtggatggttcttcctatctctatcgggcctactatgcaccacctcacctaaccaactcc
aagggtgaagcaaccggggcggtttacggcgtagtcaacatgttgcgcagcttactgggt
aaatacaagccacatcaaatggcggttgtttttgatgccaagggtccgacattccgcaac
gagatgtatgccgaatacaaggctcataggccaccaatgccggatgatctgcgcaatcag
atagcgcctctgcatgccatcatcgaggctcttggtctgccactcttgtgtataccagga
gtagaagccgatgacgtaataggtacccttgcctccagggccagtaaggaaggacgtgcc
attctgatcagcacaggcgataaggatatggcgcagctggtagatgacaatgtcaccctg
atcaacacaatgacagacaccataatggggccggaagaggtcaccagcaaatttggtgtt
ggccccgagcttattatcgacctgctagcactgatgggcgacaaggccgataacatccca
ggcttgcctggagtgggtgaaaaaaccgcgttggccatgctgacaggtgcaggtggggtc
gccaagctattgcagcaaccggattgcgtcacagaactgggcttccgtggtgccaagacc
atggccaagaaaatcatcgacaacgccgagatgctgcaactctcctacgatctggcgacc
atcaaaacagattgcgagctggatctggactggcaccaactcaatattaccgagcccaac
aaagaccagttggcgcagctttatggtgagatggagtttaaacgttggttggcagaagtc
ctggataacaagatcccgcatcccttggcggtcaagactgcaacggctgaaacccaggaa
gaaactgcagcaccagccacgatagagacagaatacgaaaccatactgaccgaggccgcc
ctggaaaaatggctgaaaaagttagccgaagccgaactgatggcggtagataccgaaacc
accagcctcaattatatggatgctaaactggtagggctgtcttttgctgtcaaggccgga
gaggcggtctatctacctctggggcacgattacccaggagcccccgagcaactgccccgg
gaaaaggtattggccaagctcaaaccgattcttgaaaaccctgagataaagaaggtcggt
caaaatctaaaatatgacatcagtattctggccaatgccggtatcaagctggccggtgtt
gccttcgataccatgctcgaatcctatgtcttcaactcagtggcatccaggcacgacatg
gacggactggcactcaagtacctggggcacaaatgtgtcagtttcgaagagattgcaggt
aaaggcgccaagcagctgacattcaaccagatccctctggaaactgcatcgccttacgcg
gccgaagatgccgatattactcttaggctacatcaacatctgtggcccaggctcgaacgg
gagcaagagttagccaaggttttcacggaacttgaactaccacttattcaggtgttgtca
cagatggagcgtgacggcgtgctgatcgatagtatgcaattgtcgcaacagagtgatgag
ctggcgcaaaaaatagatgcgttggagcaaaaagcctacgagatcgccggagagaaattc
aacctcagttcccccaaacaactgcaggcactattcttcgaaaagctgggttatccggtg
atcaagaaaactccgaaaggcgccccctccaccgcagaagaagtgctgatagagttggcg
ctggattatccattgccaaagatcattctcgaacatcgtagcctgaccaaactaaagagc
acctacacggataaattaccgctgatgatcaatggcaaaaccggtagagtgcacaccagc
taccatcaggctaacgccgctaccggccgtttgtcatccagcgaccctaacctgcagaat
attcctatccgcaccgaagagggacgtagaattcgtcaagcctttatcgcaccttcaggg
cgcaagattttggccgccgactattcacagattgagctcaggatcatggctcacttgtcc
caggatgccggcctgctggcagcattcgccgagggtaaagatattcacagagcaacagcg
gctgaagtcttcgatgtagcgtttgaaactgtcactccagaacagcgtcgccgcgccaag
gcggttaacttcggtctgatttatggcatgtcggcctttggcttggcacgccaactggat
attcctcgcactgaagcacaaagctatatggatacctacttcaagcgttatcccggcgtg
ctcaagtatatggaagagacccgggcactcgccgccgagcaaggttatgtctccacactc
tttggcagacgcttatatctgccggaaatccgcgaccgcaacgccatgaggcgtcaagcc
gcagaacgagcggctatcaacgctcctatgcagggtacagcagccgacattatcaaaaag
gcgatgatcaaagttgccaactggatagctgctgacaccaagggggaaatcaccatgatc
atgcaagttcacgatgaattggtgtttgaggtcgatgcagcgaaagccgaagagctgcaa
caacagatctgcaaactcatggctgaagcggctaccctggatgtccctttactggccgaa
gccggcctgggtgacagctgggaccaagcccactaa
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