Shewanella carassii: TUM17387_03420
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Entry
TUM17387_03420 CDS
T07543
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scaa
Shewanella carassii
Pathway
scaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUM17387_03420 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scaa03019
]
TUM17387_03420 (recQ)
03400 DNA repair and recombination proteins [BR:
scaa03400
]
TUM17387_03420 (recQ)
Enzymes [BR:
scaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TUM17387_03420 (recQ)
Messenger RNA biogenesis [BR:
scaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TUM17387_03420 (recQ)
DNA repair and recombination proteins [BR:
scaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TUM17387_03420 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
BCV64983
LinkDB
All DBs
Position
371835..373676
Genome browser
AA seq
613 aa
AA seq
DB search
MDQPLSIAPESLNHPQDPMQQALQQVFGYRTFREGQRQVIERVMAGEDCMVIMPTGGGKS
LCYQLPALLMPGLTLVVSPLISLMKDQVDSLLQTGVNAAYLNSSLPREQSLKVLRQLHQG
EIRLLYVSPERLLQHEFIERLQSLPLSMFAVDEAHCISQWGHDFRPEYAQLGRLKQLFPG
VPVMALTATADKATRDDICQRLNIAPYVLLSSFDRPNIRYTVAEKLNAANQLRQFIAAQN
GAAGIVYCSSRRRVDEVAERLRLQGYAAEGYHAGMSSDERASVQDRFLKEQLDIVVATVA
FGMGINKSNVRFVVHYDLPKSIEAYYQETGRAGRDGLEAEAFMLFEPADIGRVRHLIEQG
EPGPQQQVELHKLNTMAAFAEAQTCRRQVLLHYFDEPALEPCGNCDICLDPPKRYNGTED
AQKVLSCIYRLGQKFGMNQLIEVLRGSKSAAVVDRGHDKLSTWGVGKDKSHEYWLSVTRQ
LIHLGLASQDITRGSSIRLNPAARPVLRGEVALMLAEPRIDLHVTRRRNVSSKAPLNYDR
KLFARLKQLRRSIAEEQDVPPYLVFNDATLAEMAAILPTSQGEMLAVNGVGERKLARFGD
QFLDEIEAYLAGD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggatcagccgctgagtatcgctcccgagagcctaaatcatccccaagaccctatgcag
caagccttgcagcaggtgttcggctaccgcactttccgtgaagggcagcgccaggtgatt
gaacgtgtgatggccggggaagactgcatggtgatcatgcccaccggcggcggcaagagt
ctgtgttaccaactgcccgcattgttgatgccagggctgactctggtggtttcgccgctg
atctccctgatgaaagatcaggtcgacagcctgctgcagaccggggtcaatgccgcttat
ctcaactcatccctgcctagggagcagagcctcaaggtgctgcgccagttgcatcagggt
gagatccgcctgttgtatgtctcgccggagcgcttgctgcaacatgagtttattgagcgg
ctgcaatccctgccgctgtcgatgtttgccgtggatgaggcgcattgtatcagccagtgg
ggccatgattttcgccccgaatatgcccagcttggccgcctgaagcagctgtttcccggc
gtgcctgtgatggcgctgaccgccaccgccgacaaggcaacccgggatgatatctgccag
cggctcaatatcgccccctatgtgcttctttctagctttgataggccgaatattcgctac
acagtggcggaaaagctcaacgccgccaatcaattacgccagtttatcgccgcgcagaac
ggcgccgccggaattgtttattgctccagccgccgccgggtcgatgaagtggccgaaagg
ctgcggttacagggctatgccgccgaaggctatcatgccggtatgagcagcgacgagcgt
gccagtgtccaggacagatttctcaaggaacagttggatatagtggtggccacggtcgcc
ttcggcatggggatcaacaagtccaacgtgcgttttgtggtgcattacgatctgcccaag
agcatagaggcctattatcaggaaaccggccgcgccgggcgagatggtcttgaggccgaa
gcctttatgctgttcgagcccgccgatatcggccgggtgcgccacctgattgagcagggt
gaacccgggccgcagcaacaggtggaactgcataaactcaataccatggcggcctttgcc
gaagcccagacctgccgccgccaggtgttgctgcactacttcgatgagccggcgctggag
ccctgcggcaactgtgacatctgcctggacccgccgaaacgctacaacggcaccgaggat
gcacagaaggtgttgtcctgcatatatcgcttggggcagaagtttggcatgaaccagctg
atagaggtgctcagaggctccaaatcggccgccgtggtcgaccgggggcacgacaagtta
tccacctggggcgtcggtaaagacaagagccatgaatactggctcagtgtgaccaggcag
cttatccatttggggctggcgagccaggatattacccgcggctcgagtattcgcctgaat
ccggccgccaggcctgtgctcaggggcgaagtcgcactgatgttggccgaacccagaatt
gacttgcatgttacccgcaggcgcaacgtcagcagcaaggcgccactcaactacgatcgc
aagctgtttgcccgcctcaagcagttaaggcgcagcatagccgaagagcaggacgtaccg
ccctatctggtattcaacgatgcaaccctggcggaaatggcggcgattttgcctaccagc
cagggcgagatgttggcggtcaatggtgttggtgaacgcaaactggcccgctttggcgat
cagttcctcgacgagatagaggcttatctcgccggtgactga
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