Shewanella carassii: TUM17387_04000
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Entry
TUM17387_04000 CDS
T07543
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
scaa
Shewanella carassii
Pathway
scaa03420
Nucleotide excision repair
scaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TUM17387_04000 (uvrD)
03430 Mismatch repair
TUM17387_04000 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scaa03400
]
TUM17387_04000 (uvrD)
Enzymes [BR:
scaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TUM17387_04000 (uvrD)
DNA repair and recombination proteins [BR:
scaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TUM17387_04000 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
TUM17387_04000 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCV65041
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All DBs
Position
462689..464854
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLLQVENQSPYSIMAV
TFTNKAAAEMRERVEKIVGNHMGRMWIGTFHGLAHRLLRTHWQDAGLPQNFQILDSDDQL
RLLKRILKSLNLDEKQYPPRMVAGYINGKKDEGLRPKHLDGGLFPMEQKLVQIYQVYQES
CDRAGLVDFAEILLRAHELFLNKEHILAHYQDRFRNILVDEFQDTNAIQYAWIRVLAGKS
ANVMIVGDDDQSIYGWRGAQVENLHKFLQDFPNAETIRLEQNYRSSGNILKASNELIANN
PDRLGKQLWTEDVDGEPISVYCAFNEMDEARFIIGRIGDWQDKGGSLSDCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYLRLIANRDDDAAFERVVNTPARGIGD
RTLDILRTTARQQQLTLWQACVRLLEEKVLAGRAANAVRCFMDLIVQLRSDTEELPLYRQ
ADRVIQDSGLKAMYEQEKGEKAQARVENLEELVTAARTFEVPEELVDMGELNAFLSHAAL
EAGEGQADAHTDAVQLMTLHSAKGLEFPLVFMAGVEEGLFPSQLSLEEGDRLEEERRLCY
VGMTRAMQQLYITYAESRRIYGRENYSRPSRFIKEIPPQYLQEIRLKAQVATPMANNRFS
KSQGSFNDTGFNVGQRVAHPKFGEGIVTNFEGQGAQARVQVNFDDFGSKWLVVAYAKLVA
C
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttattggatggcctgaatgacaagcagcgtgaggcggtggccgca
cctcaatcgagcatgctggtgctcgctggagccggtagtggcaagacccgggtactgact
cacaggattgcttggctgctgcaggtggaaaaccagagcccatactccattatggcggta
accttcaccaataaggcggccgccgagatgcgggaacgggtggagaagatagtcggcaac
catatgggccgcatgtggatcggtaccttccatggtctggcccatcgtctgctgcgcact
cactggcaggatgccggcctgccgcaaaattttcagatcctcgactcggatgatcagctc
cgcctgctcaagcgtatcctcaaaagcctgaatctggatgagaaacagtatccgccgcgg
atggtggccggctatatcaacggcaagaaggatgaaggactcaggccgaaacatctggat
ggcggcctcttcccgatggagcagaagctggtgcaaatctatcaggtgtatcaggaatcc
tgtgatcgcgccgggctggtagactttgccgagatactcttgcgagctcacgaactgttt
ctcaacaaggaacatattctggcccactatcaggatagattccgcaatattctggtggat
gagtttcaggataccaacgctattcaatatgcctggatcagagtactggcgggcaagagt
gccaatgtgatgatagtgggcgacgacgaccagtccatctatggctggcgcggtgcccaa
gtggaaaacctgcacaagtttttgcaggactttcccaatgccgaaaccattcgcctggag
caaaactaccgttccagcggcaatattctcaaggcctccaacgagcttatcgccaataac
ccggatcggctgggcaaacagctgtggaccgaagatgtcgatggtgagcctatctcagtt
tactgtgccttcaatgagatggatgaagcccgcttcatcataggccgcattggcgactgg
caggacaagggcggcagtctcagtgactgcgccatcctctatcgcagtaatgctcaatcg
cgggtgttggaagaggccttgctgcacaaggggctggcctatcgcatctatggcggcttg
cgcttcttcgagcgtcaggagatcaaggatgccatgggatacttgcgtctgattgccaat
cgcgatgatgatgccgctttcgagcgggtggtcaacactcccgccagaggcataggcgat
cgcaccctggatattctcagaaccacggcccggcagcagcaactcaccctgtggcaggcc
tgcgtccgtttgttggaggagaaggtcttggctggccgtgccgccaatgcggtgcgctgc
tttatggacttgatagtgcagctgcgcagcgacaccgaagagctgcccctctatcgccag
gcggatagagtgatccaggactccgggctcaaggccatgtatgagcaggaaaagggcgaa
aaggctcaggccagagtggaaaacctcgaggaactggtcaccgcggcgcgcaccttcgaa
gtgccggaagagctggtggacatgggtgagttgaacgccttcctgtcccatgcggcactg
gaggcgggagaaggccaggccgatgcccacacagatgcggtgcagctgatgacgctgcac
tcggccaaggggctggagttcccgttggtgtttatggccggtgttgaagaaggactgttc
cccagccagttgtcgctggaagagggcgatcgcttggaagaagagcggcgtctgtgttac
gtgggcatgacccgcgccatgcaacagctgtatatcacctatgccgagtcacgccgcatc
tatggccgtgaaaactactcacggccatcgcgctttatcaaggagatcccgcctcagtat
ctgcaggagatccgtctcaaggcgcaggtggcaacccccatggccaataacaggttcagc
aagtcgcaaggcagcttcaacgacacgggctttaatgtcggccaacgggtggcgcacccc
aaattcggtgaaggcatagtaaccaacttcgagggccagggcgcacaggccagggtgcag
gtaaattttgacgatttcggcagcaagtggttggtggtggcttacgccaagttggttgct
tgttga
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