Shewanella carassii: TUM17387_05460
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Entry
TUM17387_05460 CDS
T07543
Name
(GenBank) DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
scaa
Shewanella carassii
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scaa03032
]
TUM17387_05460
03036 Chromosome and associated proteins [BR:
scaa03036
]
TUM17387_05460
03400 DNA repair and recombination proteins [BR:
scaa03400
]
TUM17387_05460
DNA replication proteins [BR:
scaa03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
TUM17387_05460
Chromosome and associated proteins [BR:
scaa03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
TUM17387_05460
DNA repair and recombination proteins [BR:
scaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
TUM17387_05460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
DUF3791
TFIIB
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
BCV65187
LinkDB
All DBs
Position
complement(604362..604634)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTELIAKMAEHANLSKAEAARALKSFEVAVTDAMKEGTKISIVGFGSFETSTRAARTG
RNPQTGKEIQIPAATIPKFKAGKSLRDSVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaactgaactgatcgctaaaatggcagaacacgccaacctgtccaaggccgaa
gctgcccgcgccctcaagtcgttcgaagtagcagtgaccgatgccatgaaagaaggaact
aaaatctccatcgtaggctttggctctttcgaaacttcaacccgtgccgcccgcacaggt
cgtaacccgcaaaccggtaaagagatccagatccctgccgctacgattcccaagttcaag
gctggcaaatcactgcgtgacagcgtcaactaa
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