KEGG   Shewanella carassii: TUM17387_06240
Entry
TUM17387_06240    CDS       T07543                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
scaa  Shewanella carassii
Pathway
scaa02024  Quorum sensing
scaa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scaa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TUM17387_06240 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    TUM17387_06240 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scaa03019]
    TUM17387_06240 (hfq)
   03036 Chromosome and associated proteins [BR:scaa03036]
    TUM17387_06240 (hfq)
Messenger RNA biogenesis [BR:scaa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     TUM17387_06240 (hfq)
Chromosome and associated proteins [BR:scaa03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    TUM17387_06240 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: BCV65265
LinkDB
Position
681828..682103
AA seq 91 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPFNVSNHQSGGQQNYNSQHDDSSEQ
NT seq 276 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagacccatttctgaacgcacttcgccgtgagcgcgtt
cctgtttccatctacctggtcaacggtatcaagttgcagggacaggtggagtcttttgac
cagttcgtgatcttgctgaaaaacacggttagccagatggtttacaagcacgccatttcg
actgtagtgccttctcgtcccttcaatgtgagcaatcatcaaagtggcggtcagcaaaac
tacaactcgcagcacgacgatagcagcgaacagtaa

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