Shewanella carassii: TUM17387_06240
Help
Entry
TUM17387_06240 CDS
T07543
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
scaa
Shewanella carassii
Pathway
scaa02024
Quorum sensing
scaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUM17387_06240 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
TUM17387_06240 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scaa03019
]
TUM17387_06240 (hfq)
03036 Chromosome and associated proteins [BR:
scaa03036
]
TUM17387_06240 (hfq)
Messenger RNA biogenesis [BR:
scaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
TUM17387_06240 (hfq)
Chromosome and associated proteins [BR:
scaa03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
TUM17387_06240 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
BCV65265
LinkDB
All DBs
Position
681828..682103
Genome browser
AA seq
91 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPFNVSNHQSGGQQNYNSQHDDSSEQ
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatctttacaagacccatttctgaacgcacttcgccgtgagcgcgtt
cctgtttccatctacctggtcaacggtatcaagttgcagggacaggtggagtcttttgac
cagttcgtgatcttgctgaaaaacacggttagccagatggtttacaagcacgccatttcg
actgtagtgccttctcgtcccttcaatgtgagcaatcatcaaagtggcggtcagcaaaac
tacaactcgcagcacgacgatagcagcgaacagtaa
DBGET
integrated database retrieval system