Shewanella carassii: TUM17387_07350
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Entry
TUM17387_07350 CDS
T07543
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
scaa
Shewanella carassii
Pathway
scaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUM17387_07350 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scaa03019
]
TUM17387_07350 (rhlE)
Enzymes [BR:
scaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TUM17387_07350 (rhlE)
Messenger RNA biogenesis [BR:
scaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TUM17387_07350 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
P-loop_SecA
HI1480
Motif
Other DBs
NCBI-ProteinID:
BCV65376
LinkDB
All DBs
Position
complement(804709..806208)
Genome browser
AA seq
499 aa
AA seq
DB search
MSFASLGLSAPILNAVAEQGYSTPSPIQAQAIPAVLQGRDVMAAAQTGTGKTAGFTLPLL
ERLNGGIRPRGNHIRALVLTPTRELAAQVAESVGLYGKHLDLRSSVVFGGVSINPQMQTL
RKGVDILVATPGRLLDLYQQNAVKFGQLEVLVLDEADRMLDMGFIHDIKKILALLPAKRQ
NLMFSATFSDDIRRLAKGLVHDPAEISVAPANSTAERVSQKLHPVDKSKKSALLTSLIKE
YKWQQVLVFTRTKHGANRLAKHLDGKGIGAAAIHGNKSQGARTKALADFKSGKVKVLVAT
DIAARGLDIDQLPQVVNFDLPNVAEDYVHRIGRTGRAGASGQAVSLVSAEEFKQLKDIEQ
LIGKTIEREIVNGFEPQEALPESRLNPNKIGPKKPKKPKKPKEGHQDGQRSGNLDKGNGN
KPANAENRHRRPAQGAKTEGSSARRRPANAKPQGGRSQESKPQGTGKGNNGSGQQRNNQG
RASQQRDSQARGSRQRNER
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgcctccctgggcctgtcggccccgattttgaacgctgtcgccgaacaaggt
tactccactccatcccccattcaagcccaggccattcccgcagtattgcagggccgggat
gtaatggctgccgcccagacagggacaggcaaaaccgccggctttaccttgcctttgctg
gagcgtctcaatgggggtattcgtccgcggggcaaccatatccgcgctttggtgctgacc
cccacccgtgagctggccgctcaagtggccgaaagcgtcggtctctatggcaagcatctg
gatctgcgcagctctgtggtctttggcggtgtttccattaacccacagatgcagaccttg
agaaaaggggtcgatatcctggtggccacaccgggacgcctgttggatctgtaccaacaa
aatgccgtcaaattcggccagttggaagtgctggtgctggacgaagccgaccgcatgctg
gatatgggctttattcacgacatcaaaaaaattctggctttgctgccggccaagcggcaa
aacctgatgttcagtgccactttctctgacgacattcgccgcctggccaagggcttggtg
cacgatcccgccgagatctcagtggctccggccaatagcaccgccgagcgggtgagccag
aagttgcacccggtagacaagtcaaagaaatcggcgctgctgacctcgcttatcaaagag
tacaagtggcaacaggtactggtgtttacccgcaccaaacacggtgccaaccgtctggcc
aagcacctggatggcaaaggaattggcgcggcggccatccacggcaacaagagccagggt
gccagaaccaaggcactggccgatttcaagagtggcaaggtcaaggtgttggttgccaca
gatattgccgcccgcggtctggatatagatcagttgccgcaagtggttaacttcgatctg
cccaatgtggccgaagactatgtgcaccgcatcggccgtaccggccgcgccggtgccagt
ggtcaggcagtgtctctggtgagtgcggaagaattcaagcagctcaaagacatagagcag
ctgataggcaagactatcgagcgtgaaatcgtcaatggcttcgaacctcaggaagccttg
ccggaatcgcggctcaacccgaacaagataggcccgaaaaagcccaagaagccgaaaaag
cccaaagaggggcatcaggatggccagcgcagcggcaacctggataaaggtaatggcaac
aagccggccaatgctgaaaaccgccatcgtcgtccggctcagggcgccaagaccgaaggt
tcaagtgccagacgcaggcccgcaaacgccaagcctcagggcggtcgctcccaagagagt
aagccgcaaggcaccggcaagggcaataacggctcaggccagcagcgcaataaccagggc
cgggcatcacagcaacgcgactcacaagcgcgcggctcccggcaaagaaatgagcgctaa
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