Shewanella carassii: TUM17387_08450
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Entry
TUM17387_08450 CDS
T07543
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
scaa
Shewanella carassii
Pathway
scaa03410
Base excision repair
scaa03430
Mismatch repair
scaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TUM17387_08450 (recJ)
03430 Mismatch repair
TUM17387_08450 (recJ)
03440 Homologous recombination
TUM17387_08450 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scaa03400
]
TUM17387_08450 (recJ)
DNA repair and recombination proteins [BR:
scaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TUM17387_08450 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TUM17387_08450 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TUM17387_08450 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
BCV65486
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All DBs
Position
943813..945537
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AA seq
574 aa
AA seq
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MIHKIVRRPRVDDSHLPANLHPLLKQIYASRGVQAPECELVLKRLLRPDTMLGLQQGAEL
VADAIAANRRILIMGDFDADGATSTSVCLLALRMMGMENCDYLIPNRFDYGYGLSPEIVA
VAHGKGAELLITVDNGISSIEGVRAAKALGMTVVITDHHLPGNELPEADAIINPNQPGCS
FASKSIAGVGVAFYLMLALRAELRKRHWFVNHALAEPNLSVLLDLVALGTVADVVSLDAN
NRILVDAGIKRVRNGACRPGITALLEVARRNPARLVAADFGFAVGPRLNAAGRLDEMALG
VETLLCDDMLKARRMAAELDGLNAERRELETGMQQEAMKSLEALQLKESEQPWGIALYQP
DWHQGVIGILASRIKDRFHRPVIAFAEASDTEIKGSARSIKGLHMRDLLELINARHPGMI
IKFGGHAMAAGLSLRKDAFEQFAEAFDTCVRELLTLEDLNGELFSDGELPLECFTLDTAQ
LLRDAGPWGQAFPEPLFDGHFRILQQRLVAEKHLKLVLETECGRIMADAIAFNVDLKTWP
DASINHVRLLYKLDVNEFRGNSNLQLLVEQLEPL
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgatccacaaaatcgtccgtcgtcccagggtggacgacagccatttacccgcaaatcta
catccgctgttaaaacagatttacgccagtcgcggcgttcaggctcccgagtgcgagttg
gtgctcaagcgtctgctcaggccggataccatgctgggcttgcagcaaggggccgagctg
gtggccgatgccatcgcggccaaccgccgcattctgatcatgggtgatttcgatgccgat
ggtgccacctccaccagtgtgtgtctgttggcgctcagaatgatgggaatggaaaactgt
gattatctgatccccaatcgtttcgattatggctatggcctcagccctgaaatagtggcg
gtggcgcatggcaagggcgccgagctactgatcactgtcgataacggtatctcctccatc
gaaggcgtcagggccgccaaggcgctggggatgacggttgtcatcacagatcaccatttg
ccgggcaatgaattacccgaggccgatgccatcattaaccccaaccaacccggttgcagc
tttgcttccaagtcgattgccggggtcggggtggctttctatctgatgttggcactgcgg
gcagagttgagaaaacgtcactggttcgttaatcatgccttggccgagcccaacttgagt
gtattgctggacttggtggccctgggcacagtggccgatgtggtgtcgctcgatgccaac
aaccgtattctggtggacgcgggtatcaaaagggtgcgaaacggcgcctgtcgtccgggg
atcactgccttgctggaagtggcccgccgcaatccggcgcgtttggtggccgccgatttc
ggctttgcggttggccccagactcaacgccgccggaaggctggatgaaatggcgctcgga
gtcgaaactctcttgtgcgatgacatgctcaaggcgagaagaatggcggccgagcttgat
ggcctcaacgccgagcgccgtgagctggaaaccggcatgcagcaagaagcgatgaagagc
ctggaggcgctgcagctcaaagagagtgaacagccctggggtattgccctgtatcagccg
gactggcatcagggggtgataggcattctggcttcccggataaaagacaggttccaccgt
ccggtaatcgcctttgccgaagccagcgacactgaaatcaagggctcggcccgctccatc
aaggggctgcatatgcgcgatctgctggagcttatcaatgcccgtcatcccgggatgatc
atcaagttcggtggtcatgccatggccgccgggctctcgttgcgtaaggatgccttcgag
cagtttgccgaggcctttgacacctgtgttcgtgagctgctgaccctggaggatctcaat
ggcgagctgttctccgacggtgaattgccgcttgaatgctttaccctggatacggcgcaa
ctgctcagagatgccggtccctggggtcaggccttccccgagccgctatttgatggccat
ttcagaattctgcagcagagactggtggcagagaaacatcttaaactggtgctggagact
gagtgcggccggatcatggccgatgccatcgccttcaatgtggatctcaagacctggccc
gatgccagcatcaatcatgtgcgcctgctgtataagctggatgtgaacgagtttcgcggc
aacagtaacctgcagttgctggttgagcagctggaacccctgtaa
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