Shewanella carassii: TUM17387_12370
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Entry
TUM17387_12370 CDS
T07543
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
scaa
Shewanella carassii
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scaa03009
]
TUM17387_12370 (rlmD)
Enzymes [BR:
scaa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
TUM17387_12370 (rlmD)
Ribosome biogenesis [BR:
scaa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
TUM17387_12370 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Methyltransf_11
PCMT
TRM5-TYW2_MTfase
MTS
Methyltransf_12
Methyltransf_23
Ubie_methyltran
UPF0020
Methyltr_RsmB-F
Cons_hypoth95
Methyltransf_15
Methyltransf_32
TehB
Ig_SIBA-E_2nd
CMAS
DUF6966
RrnaAD
DUF6865
Motif
Other DBs
NCBI-ProteinID:
BCV65878
LinkDB
All DBs
Position
1374922..1376259
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AA seq
445 aa
AA seq
DB search
MAQFFREKPNRSKKVSAKLSLTASGLDHQGAGIGQYQGKVVFIPGLLPGESAEVQLTEQK
KNYARGKLIRISQTSPERVEPQCPHYALCGGCDLQHLSDLSQRQHKQRALAELFAKLSGL
SELPVIDELVSAPWHYRRKARLATWYDKQSREFTLGFRAKSSSKVVAIGECPVLAASLSE
LIKPLAAQLAHLQGVAQLGHVELIETEAGRYAVLRITRSLVNKDKEKLKAFAEQQGLQLV
LQDNQGKCEYLTGNQPSYRLPGVDGKELTLQFNPGNFIQVNGEVNRAMVAKAIDWLQPKD
GEHILDLFCGMGNFSLPLAASGVRVTGVEGVPAMVEQARQNAKQAGLEGVKFFCADLSAD
LSAEPWLGKVDKLLLDPARAGAYETLSYLKNIAPERVVYVSCNPASLARDSVLLLEQGYR
LERLTVLDMFPQTHHTEAMALFVRN
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcacaattttttagagaaaaaccaaacagatccaagaaagtctccgcaaaactgtca
ctcacggcttccggattggatcatcagggtgccgggatcggtcaatatcagggcaaggta
gtgtttattcccggcttgttgcctggtgagagcgccgaggtgcagctcaccgaacaaaaa
aagaactatgccaggggcaaactcatccgtatcagccagacctctcctgaacgagtcgag
ccccaatgcccccattatgcgctttgcggtggttgcgatctgcaacatctgtcagatttg
agccagcggcagcataagcagcgagcattagccgagctgtttgctaaactctcgggtcta
tccgaattacccgttattgatgaactggtatctgccccttggcattatagacgcaaggcc
agactggcgacctggtatgacaaacaaagtcgcgaattcacccttgggttcagggccaag
tccagcagcaaggtggtggccattggcgagtgtcctgtattggcggcttcgttgtcggaa
ctgataaagccgttggcggcgcaactagctcacctgcagggcgtggctcagcttggtcat
gtggagctgattgaaaccgaagccggtcgttatgctgtgctgcgtatcactcggtcactg
gtgaataaagacaaggaaaagctcaaggcctttgccgagcagcaaggattgcagttggtg
ctgcaggacaatcagggcaagtgtgagtaccttacgggcaatcagccaagctaccgcttg
cccggcgttgatggcaaagagctgacgcttcagtttaatccggggaattttattcaggtc
aatggtgaagtaaaccgcgccatggtggccaaggccatagattggctgcaacccaaggac
ggcgagcacatactggatctcttctgcggcatgggtaacttcagcctaccgctggcggcc
agcggcgttagggtcacaggtgtcgagggcgtgcccgccatggttgagcaggccagacaa
aatgccaaacaggcagggcttgaaggtgtgaagttcttttgcgccgatctcagcgccgac
ctctcggccgagccctggcttggcaaggtggataaactgttgctggatcccgcccgggcc
ggagcctatgagacgctttcttatctgaaaaacatcgcgccagagcgagtagtgtatgtc
tcttgcaatccggcgagcctggcgcgggacagcgtgttgctgctcgagcaaggttatcgc
ctagagcgcctcactgtgttggacatgttcccccagacccatcacaccgaagccatggcc
ttgtttgtgcggaattga
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