Shewanella carassii: TUM17387_15390
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Entry
TUM17387_15390 CDS
T07543
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scaa
Shewanella carassii
Pathway
scaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TUM17387_15390 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scaa03400
]
TUM17387_15390 (mfd)
Enzymes [BR:
scaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TUM17387_15390 (mfd)
DNA repair and recombination proteins [BR:
scaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TUM17387_15390 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BCV66180
LinkDB
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Position
complement(1702481..1705945)
Genome browser
AA seq
1154 aa
AA seq
DB search
MNKFSVLAPAGAPKAGEIRHLGLGEGVERALTLANLARQHQGVSLLVTADTPTALTLEAE
LKYLLGDALPVWLFPDRETLPYDSFSPHQDLISQRLETLSRLPSAKRALVIVPINTLMVR
LPPKSFLSANVMLLNKGDNYSLQQMREHLVSAGYHLVGQVYEHGEFAIRGSILDIFPMGS
AEPLRIELFDDEVESIRHFDPETQLSKEPLSQVRMLPAKEFPTDERAIESFRQRYRRYFE
VLVKEPESIYQQVSRHLMPAGIENYLPLFFDETATLFDYFAGDVQLLTLGDLQQAADTHL
TQVRNRYEDRRVDPLRPLLAPADLYLLTEQLFAAFKRWPRLQLSQVDAQKQQQLAAVSAL
PDISVNHKLKQPLQALADYIASAGRVLLSAESEGRREALMELLAKIELRPVLFPHLKAFI
DSDAPLGLIVSPLAKGCVLNEPKLSIICETELFGQRISQQRRREKQRQISSDALIKNLAE
LKVGQPIVHLEHGVALYQGLETLDTGGVVAEYLKLEYAGGDKLYVPVSSLHLISRYAVAP
DESPNLNKLGNESWAKAKKKAIERIRDVAAELLDVYARRQARPGEACELDEAEYALFAQG
FPFEETVDQETSIAAVLADMQSPVAMDRLICGDVGFGKTEVAMRAAFVAVNAGKQVVVLV
PTTLLAQQHYENFKDRFADWPVQIEVISRFRTAKEQQQVIADLANGKVDIVIGTHKLLNS
EVKFDALGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPAKRLAVKTFVREYDKASVREAIEREILRGGQVYYLHNNVESIEKRAEELRELLPDA
RVVVAHGQMRERELERVMSDFYHRRYNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL
HQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAG
ELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEIELRIPALLPEDY
VGDVNIRLSLYKRIANCTTEAALDELKVELIDRFGLLPEATRNLMQLTLYKHQATALGLK
KLDFHARGGSVEFGDDHIIDPGFIIGLLQSQPQIYRMDGPNKLKFTLAAESSKERLEMVG
LLLQQLAQHTVGEK
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaataagttttctgtactggcgcctgcgggtgccccaaaggccggcgagatccgccat
ctcggcctcggcgaaggcgtggagcgcgcgctgaccttggccaacctcgcccgccaacat
caaggtgtcagcctgttggtaacagcggatacgccaaccgccctgacactggaagccgaa
cttaaataccttctgggtgatgccctgcccgtgtggttatttcccgatcgggagaccctg
ccctacgacagcttttcgccgcatcaggatctgatctcccagcggttggaaaccctgtca
aggttgccaagtgccaagcgcgccctggtaatagtgcctatcaacaccctgatggtgcga
ctgccacccaagtctttcctgtcggccaatgtgatgttgctgaacaagggcgacaactat
agcctgcaacagatgcgcgagcacttggtcagcgccggttaccatctggtcggccaggtt
tatgaacatggcgaatttgccattcgcggctcgattctggatatctttcccatgggctca
gccgagccgctgcgaattgaactgttcgatgatgaagtggaatcgattcgccatttcgat
cctgaaacccagctatccaaggagcccctgtcgcaggtacggatgctgccggccaaggag
ttccccacagatgaacgggccatagaaagcttccgccagcgttatcggcgctattttgaa
gtattggttaaagagcccgagtccatctatcagcaggtgagccgccatttgatgcccgcc
ggtatcgaaaactacctgcccttgttctttgatgaaaccgcgaccctattcgactatttt
gccggcgatgtgcaactgctgacgctgggcgacctgcagcaggccgccgacacccacctg
actcaggtgcgcaatcgctatgaagacaggcgggtcgatccgctgcggcccctgctggcc
ccggcagacctatatctgttgaccgagcagctgtttgccgccttcaagcgctggccaaga
ctgcaactgagccaggtggatgcccaaaaacagcagcaattggctgcagtaagcgcgctg
ccggatatctcggtcaaccataagctgaagcagcccttgcaggcattggccgattatatc
gcctcggcaggcagagtcctgctgagcgccgaatccgaaggccgccgcgaggcgctgatg
gagctgctggccaagatagagttgcgcccggtactgttcccgcatctcaaggcgtttatc
gactcggatgcgccgctggggttaatcgtctcgccccttgccaagggctgcgtactcaat
gagcctaagctcagcattatttgcgagaccgagctcttcggtcagcggatctcccagcag
aggcggcgggaaaaacagcgccagatcagcagtgacgccctgattaaaaacctcgccgag
ctcaaggtcggccaacccatagtgcacctggagcacggggtcgccctctatcaagggctg
gaaaccctggataccggcggcgtggtggccgaatacctcaagctggaatacgccggtggc
gacaaactctatgtgcctgtgtcgtcactgcacctcatcagccgctacgctgtggcgccg
gatgaatcccccaacctcaacaagttgggcaacgagagctgggccaaggccaagaagaag
gcgatagagcgcattcgtgatgtggccgccgagctgctggatgtttacgctcgccgtcag
gcccgcccaggcgaggcctgtgaactggatgaggccgaatacgccctgttcgcccagggt
ttcccgttcgaagagacagtggatcaggaaacctccatcgccgccgttctcgccgatatg
cagtcaccggtggctatggaccgtctgatctgtggtgacgtgggctttggcaagacggaa
gtggccatgcgcgccgcctttgttgccgtcaacgccggcaagcaggtggtggtgttggtg
cccacgacgctgctggctcagcagcactatgaaaacttcaaggacaggttcgccgactgg
ccggtgcagattgaagttatatcccgttttcgcaccgccaaagagcagcaacaggtgatt
gccgacctggcaaacggcaaggtggatattgttatcggcacccataagctgctcaacagc
gaggtgaaatttgacgccctcggcctgcttatcatagatgaggagcacaggttcggggta
cggcagaaagagaaaatcaaggcgctcagggccaatgtggatattctcaccctgacggcg
acccctattccccgcaccctgaatatggccatgtccggcatgcgggatctgtcgattatc
gccaccccgcctgccaaacgcctggcggtgaaaactttcgtacgcgaatacgacaaggcc
agtgtccgtgaggccatagagcgggagatcctccgtggcggccaggtctattacctgcac
aacaatgtggagagcatagagaaacgcgccgaggagctgcgcgagttgttgcccgatgcc
agagtggtagtggcccacggccagatgcgcgagcgcgagctggagcgggtaatgtccgat
ttttaccacagacgctacaacgtgttggtgtgtaccaccattattgaaaccggtatcgat
gtaccgagcgccaacaccatcatcatagagcgggccgataccttcggattggcgcagctg
catcagctcaggggccgggttggccgctcccatcaccaggcttatgcctatctgatgacc
ccgcatccgaaacgcatgacctcagatgcccgcaagcgcctagaagcgattgacgccctg
gaggatctcggcgccggctttatgctggcgactcaggatctggagatccgcggcgccggt
gaattgctgggggatgagcagagcggccatatctccaagataggcttcagcctctatatg
gagatgctggagtcggcggtcaaggcgctgaaacagggcaaggagccatccctggcgcag
atgctcaaccagcagtgcgaaatcgagctgaggatcccggcgctgttgccggaagactat
gtgggcgatgtcaatattcgcctgtcgctctacaaacggatagccaactgcactacggaa
gcggcactggatgaactcaaggtggaactgattgaccgtttcggtttgttgcctgaagcc
acccgaaacctgatgcaactgacactgtacaaacatcaggccaccgcgctcgggctgaag
aaactcgattttcacgcccgcggcggcagtgtcgagtttggtgacgaccatattatcgat
cccggctttatcattggcctgttgcaatcccagccacaaatctatcgaatggatggaccg
aataagttaaagttcaccctggcggccgaaagcagtaaagaacgcctggagatggtgggt
ctactgctgcaacaactggcacaacacactgtgggagaaaaatag
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