Shewanella carassii: TUM17387_18280
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Entry
TUM17387_18280 CDS
T07543
Symbol
fadD_1
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
scaa
Shewanella carassii
Pathway
scaa00061
Fatty acid biosynthesis
scaa00071
Fatty acid degradation
scaa01100
Metabolic pathways
scaa01212
Fatty acid metabolism
scaa02024
Quorum sensing
scaa04146
Peroxisome
Module
scaa_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
TUM17387_18280 (fadD_1)
00071 Fatty acid degradation
TUM17387_18280 (fadD_1)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
TUM17387_18280 (fadD_1)
09145 Cellular community - prokaryotes
02024 Quorum sensing
TUM17387_18280 (fadD_1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
scaa01004
]
TUM17387_18280 (fadD_1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scaa04147
]
TUM17387_18280 (fadD_1)
Enzymes [BR:
scaa01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
TUM17387_18280 (fadD_1)
Lipid biosynthesis proteins [BR:
scaa01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
TUM17387_18280 (fadD_1)
Exosome [BR:
scaa04147
]
Exosomal proteins
Exosomal proteins of breast milk
TUM17387_18280 (fadD_1)
Exosomal proteins of breast cancer cells
TUM17387_18280 (fadD_1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
BCV66469
LinkDB
All DBs
Position
2038117..2039790
Genome browser
AA seq
557 aa
AA seq
DB search
MDQPWINSLPADVPAEIDVHRYTSLLEMFEKAVNTYADQPAFVNMGATLTYRKLEERSRA
FAAYLQNDLKLQKGDRVAIMMPNLLQYPIALFGVLRAGMVVVNVNPLYTPRELKHQLVDS
GAKAIVVVSNFASTLEAVVDQTPVKNVIITGLGDLLSAPKRTLVNFVVKYIKRLVPKYSL
PHAISMRRALRAGKKAQYVKPEVKSDDVAFLQYTGGTTGVSKGAMLSHGNIVANVLQANG
AYAPLLNDGKEFVVTALPLYHIFALTVNCLLFLHKGANNLLITNPRDIPGFVAELKKTPF
TALTGVNTLFNALVNSEEFKALDFSRLKLSIGGGMAVQRAVADKWQNITKTRLLEGYGLT
EASPLVACCPYDLAGYNGSIGLPAPSTQIQVRGDDGQVLPQGETGELYAKGPQVMLGYWQ
RPEETAKVIDKDGWLATGDIGYMDEKGFFYIVDRKKDMILVSGFNVFPNEVEEVVALHPK
VVEVAAVGVPHEVSGELVKIFVVAKDKSLTDKELIKHCRHHLTGYKVPKLVEFRDELPKT
NVGKILRRELRDEAKSA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggaccagccctggattaacagtctgcctgccgatgtgccagctgaaattgatgtacac
cgttatacttctttgctggagatgtttgagaaggcggtgaatacttatgccgatcaaccc
gcgttcgtcaatatgggggcaaccctgacctaccgaaagttggaagagcgcagccgggct
tttgctgcctatttgcaaaatgatctcaagttgcaaaagggcgatcgagtggcgatcatg
atgccaaacctgttgcaatatcctatcgcgctgtttggtgtgttgcgagccggcatggtc
gtggtcaatgtcaacccgctctataccccaagagagctcaagcatcagctggtcgattcc
ggtgccaaggctatcgtggttgtgtccaactttgccagtacgctggaagcggttgtcgat
caaacgccggtcaagaatgtgattatcacagggcttggtgatctcttgagtgctcccaag
cgtaccttggttaattttgtggtgaagtacatcaagcgcttggtacccaaatactctctg
ccccacgccatctccatgcgccgagccttgagagccggcaagaaagcacaatatgtcaag
cctgaggtcaagagtgatgatgtggcctttttgcaatataccggcggtaccacaggcgtt
tccaagggcgccatgctcagccatggcaacatagttgccaacgtattgcaggccaacggt
gcttatgcccccctgctcaacgatggcaaggagtttgtggtaaccgccttgccgctttac
catattttcgctttgacggtgaattgtttgttgttcctgcataaaggtgccaacaatttg
ctgatcaccaatccaagggacattcctgggtttgttgccgaactcaagaaaacgcctttt
accgcgctgactggagttaatactctgttcaacgccctggtcaacagtgaagagtttaag
gcattggatttctctcgcctcaagctctcaattggtggggggatggcagtgcagcgcgcc
gtagccgacaagtggcagaacatcaccaagacccgcttgctcgaaggttatggcctgacc
gaagcttcacctctagtggcttgctgcccttatgatttggccggttataacggttctatc
ggcttgccagcaccttcgacacaaattcaggtacggggtgacgatggtcaagtattgcct
cagggggagacaggcgagctttacgccaagggaccccaggtgatgttgggttattggcag
cgtcctgaagaaactgccaaagtgatcgacaaagacggttggttggccacaggcgatatc
ggctatatggatgaaaagggctttttctatatcgttgaccgcaagaaagatatgatcctg
gtttctggcttcaacgttttccccaatgaagtggaagaggtagtggccttgcatcccaag
gtggttgaagtggccgccgtgggggtaccccatgaggtcagtggtgaactggtgaagatt
tttgtggtggcaaaagacaaatctttgaccgacaaggagcttatcaagcattgtcgtcat
catttaacaggatataaagtgccgaaactggtagaattcagggacgaattgccgaaaacc
aacgtaggaaagatcctgcgcagagaactcagagatgaggccaaatctgcataa
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