Shewanella carassii: TUM17387_18290
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Entry
TUM17387_18290 CDS
T07543
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
scaa
Shewanella carassii
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scaa03016
]
TUM17387_18290 (rnd)
Enzymes [BR:
scaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
TUM17387_18290 (rnd)
Transfer RNA biogenesis [BR:
scaa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
TUM17387_18290 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
GED
Motif
Other DBs
NCBI-ProteinID:
BCV66470
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All DBs
Position
2039856..2040971
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AA seq
371 aa
AA seq
DB search
MNLQDYLYVEDDAALAQLVAQYREAKLLVLDTEFVRTRTYYACLGLIQAYDGKTLALIDP
VAISDLSSFWALLTDEKITKLLHSCSEDLEVFARQGHCQPKPLFDSQLAAAIAGMGHGLG
YAKLVQECLGVELDKGESRTDWLKRPLSKAQLSYAANDVYYLHQLYPQLLQKLQQQGRLE
WALEESQRMTEGRLDAPDEDTAYLRVKNAFQLSTQQLAVLKVLAAWRLRKALAKDMALGF
VMKDHALIGLAKRQPRGINDVLAMKELTDHEKRLYAKDVLKVMAKADMSNLPEPLDVLAL
KPGYKSAFKSIKQCLGEVAESDNVPMELLGSKRHIHEYLEWVWAGKQGPIPLVLLGWRGQ
LVADKLAKLTF
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttgcaagattacctgtatgtagaagatgatgccgccttggctcagctggtggcc
cagtaccgtgaggccaaattattggtactggatactgagtttgtacgcactcgcacttac
tatgcctgtctagggcttattcaagcctatgatggtaagactctggcgctgatagatcct
gtggctatctcggatctttctagtttctgggccttactgaccgatgaaaagatcaccaag
ttgctgcattcctgcagtgaagacttggaagtgtttgcccgtcagggccattgtcaacct
aagcctttgtttgacagtcaattggcggctgccattgccggtatgggtcacggcttgggt
tatgccaagctggtgcaagaatgcttaggggttgagctcgacaagggagagtctcgtact
gactggttgaaacgaccactttctaaagcgcagctcagttatgcggccaatgacgtttat
tatttacaccagctctatcctcagctactgcagaaattgcaacagcagggcaggcttgag
tgggcattggaagagagtcagcgcatgaccgaagggcgtctggatgcgcctgatgaagac
acggcatatctaagagtcaagaacgcctttcaactgagtacgcaacagttagccgtgctt
aaggtgttggcagcctggcgtttgcgtaaggcgctggcaaaggacatggcgctgggtttt
gtcatgaaagaccacgctcttatcggtttggctaagcgtcagccaagagggatcaacgac
gtgcttgccatgaaagagctaacggatcatgaaaagcgtctctacgccaaagatgtgctt
aaggtcatggccaaggcggatatgagcaatctgccggagcccttggatgtgttggctctc
aagcctggatataagagcgccttcaagagtatcaagcagtgtttgggagaggttgctgag
tctgacaatgtgcccatggagttactcggctccaagcgccatattcacgaataccttgaa
tgggtatgggccggtaaacaggggccaatccccttggtattgttgggctggcgtggtcag
ttggtggccgataagttagctaagctgactttctga
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