Shewanella carassii: TUM17387_21550
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Entry
TUM17387_21550 CDS
T07543
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
scaa
Shewanella carassii
Pathway
scaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
TUM17387_21550 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scaa03400
]
TUM17387_21550 (recB)
Enzymes [BR:
scaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
TUM17387_21550 (recB)
DNA repair and recombination proteins [BR:
scaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TUM17387_21550 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
ResIII
Trypan_PARP
Motif
Other DBs
NCBI-ProteinID:
BCV66796
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All DBs
Position
2420059..2423724
Genome browser
AA seq
1221 aa
AA seq
DB search
MQALEPLSLPLSGRRLIEASAGTGKTYTISGLYLRLLLGDFERPGLGCEQILVVTFTNAA
TEELRDRIRKRIRSCYQRFIGLSVKDDFIEQLYQRCPPTQRATALKQLDLALKSLDEAAI
FTIHGFCQRILSDMAFESALLFESEFTLDDNEYLRQSVRDFWRHVCYRLPTALATAIAAH
YATPDALGRELRPLLGASQASANRDPGKFDQYAEQLQTQLARLRLSWPRERDATEALLHS
LPLNGTSYGKQADGYPKLTAMLEQMDNWAKYHQGLPTPKLLDSLALGSLKLRKGGEIPTA
QQAPLLAQIDALRDSVDSLIPAFLYQARAQIAERFAELKAERNLLSPDDLLLTLAKAIGG
LTQTAPDSGLAIGEQLKQEIGKRFPVALIDEFQDTDPLQFAIFSGIYPAQLPQQDAGAEP
EPKPEPEPEPEPSRTLLMIGDPKQAIYAFRGADIYTYIEARRNTADHYNLDTNYRSASNM
IAAVNRLFANHSDPFISDAIPFEPVKAKDAGSKQLLAPGTDSAALQLRLLKEDPDKGLNK
TQARKLLAEDAAAEIVRLLNAANRGECRLSGNEQPLRARDIAILVRDRNEAAVMQQALNS
RQIGAVFLSRDSVMVTEEAREIALILKALASPRDERAIRSALACRLLGFSANKIHEFNQS
ETLRAEVLDTFMSLHELWSRRGIMPALLNLADHWQLLERLGREANAERRLTDFRHLAELL
QQKSTELEGMSALVNWFEQELLSGQSREEQQLRLASEQNLVQIVTIHKSKGLEYPVCFIP
FVSLARDGSRRPSPMLYHKDNQLVWDLDASDEGWEACKRETLAEDLRLLYVALTRPVYRC
YLGLANHCRMNKTGINSFLKDTAIGYLLGIEDKDCDGDRLQSAAASLACEAISLTEIGDA
DPSHLQGTENHSQSPLCAQVPAARQGAPWRVGSYSGLVKHLPHERVLPGAGDEEFEIELA
SVYEPQDVLQANRFSFERGANAGSFMHLVLEKIDFTQAEEELLLHLPQAMQQYGIDSDWQ
DMLYDWYRDLLNAEIALPQGQSLRLGDLSKRQKLVEMEFYLPLGGDTQLIDTELSRLLAK
HGYGGELRFDAFKGMLKGFIDLTFEYQGRFYIADYKSNHLGDDFSDYRQDKMAAAISEHR
YDLQYLLYSLALHRYLSLKLPDYCYQSHFGGCCYLFLRGMSAAHPGAGVFVDRPDEAVIL
ALDALLKGESPSSAPQLELSL
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcactggagccattgagtttaccgctgagcggccggcgcctgattgaggccagt
gccgggaccggcaagacctacactatttccggcctctatctgcgcttattgctgggtgat
tttgagcgcccgggcctcggttgtgagcagatcctggtggtcacctttaccaacgccgcc
accgaagaactacgcgacagaatacgcaaaaggatccgcagctgttatcagcgctttatc
ggcctaagcgtcaaagacgattttatcgagcagctttatcagcgctgcccgccaacgcag
cgcgcaaccgccctcaagcagctggatctggcgctcaagagcctggatgaagccgccatt
tttaccattcacggcttttgccagcggatcctctcggatatggcctttgagtcggcgctg
ctgttcgagtcggaatttaccctggatgacaatgaatatctgcgccagagtgtgcgcgat
ttctggcgccatgtctgttatcggctgccgacagcgctggcgaccgcgatagccgcccat
tatgccactccggatgcgctggggcgcgaattgagaccgctgctcggcgccagtcaagcg
agcgccaaccgcgacccggggaaattcgaccaatatgcagagcagttgcagactcagctc
gcaaggctgcgactgagctggccaagagaaagggacgccaccgaggccctgctccacagc
ctgccgctcaacggcaccagctatggcaagcaagccgatggctaccccaaactcacggcc
atgctggagcagatggacaactgggccaagtatcatcagggactgccgacacccaagctg
ctggacagcctggctctcgggtcactgaaactgagaaaaggcggcgaaatccccacagcg
caacaggcgccgctgctggcgcagatagatgcgctcagagacagtgtagactcgcttatt
ccggcattcctctatcaggcaagagcccagatagccgagcgttttgccgagctcaaggcc
gagcgcaacctgctgagcccggacgatctgctgctgaccctggccaaggccataggcggc
ctgacccagacggcgccggatagcggccttgccatcggcgagcagctcaagcaggagata
ggcaaacgcttccccgtggcgcttatcgacgaatttcaggatacggatccgctgcagttt
gcaattttctccggcatctacccggcgcaattgccacagcaggatgccggcgccgagcct
gaacccaagcccgagcccgagcctgagcctgagccaagtcgaactctgttgatgataggc
gatcccaagcaggcgatttacgcctttcgcggcgccgatatctatacctatatcgaggcc
aggcgcaataccgccgatcactataatctggacaccaactaccgctcggccagcaacatg
attgcagcggtcaaccgcctgtttgccaaccacagcgacccttttatcagtgacgccatc
ccgttcgagccggtcaaggccaaggacgccggcagcaaacagctgctcgcgcccggcaca
gactcggcggcgctgcagctcaggctgctcaaggaagatccggacaagggcctcaacaag
actcaggcccgtaaactgctggccgaagatgccgccgccgaaatcgtgcgcctgctcaat
gccgccaaccgcggcgagtgtcgcctcagtggcaatgagcagccgctgcgcgcccgggat
atcgccattttggtgcgcgacagaaacgaagccgccgtcatgcaacaagcgctcaatagt
cgccagatcggcgccgtgttcctcagccgcgactcggtaatggtcacggaggaagcgcgg
gaaatcgccctcatcctcaaggcgctcgccagccccagggatgaacgggcgattcgctcg
gcactggcctgccgcttgctgggcttcagcgccaataagatccatgaattcaaccaatct
gagacactgcgcgccgaagtgctcgataccttcatgtcgctgcatgaactctggagccgc
cgcggcatcatgccggcgctgctcaatctcgcggatcactggcagctgctggaacggctc
ggccgagaggccaacgccgagcggcgtctcaccgattttcgccatctggcggaactgctg
cagcaaaaatccaccgagctcgaaggcatgagcgccctggtcaactggtttgagcaggaa
ctgctctccggccagagccgtgaagagcagcaactgaggctcgccagcgaacaaaacctg
gtgcagatagtcaccatccacaagagtaaggggctggaatatcctgtgtgcttcatcccc
tttgtcagcctggcccgcgacggcagtcgccgcccctcgcccatgctgtaccacaaggac
aatcaattagtctgggatctggacgccagtgacgaaggctgggaagcctgtaaacgcgag
acgctggccgaagatctgcgcctcttgtatgtggcgctgacccggcccgtatatcgctgt
tatctggggctggccaatcactgccgcatgaacaagacgggcatcaacagctttttgaaa
gataccgccataggctatctgctcggcattgaagacaaggactgtgacggcgataggttg
caaagcgccgccgcatcccttgcttgcgaggccatctccttgaccgagataggcgatgca
gatccaagtcaccttcaaggcactgaaaaccactcccaaagcccactttgtgcccaggtg
ccggcggcgcgtcaaggcgcgccctggcgggtcggcagctattccggcctggtcaaacat
ctgccccacgagcgggtgttgccgggcgccggtgatgaggagtttgaaatcgagctggcc
tctgtctatgagccgcaggatgtcttgcaggccaaccgcttcagcttcgagcgcggcgcc
aatgccggttcttttatgcacctggtactggagaaaatcgactttacccaggccgaggag
gaactcttgctgcatctgccccaggcgatgcagcagtacggcatcgacagcgattggcaa
gatatgctttatgactggtatcgggatctgcttaacgccgaaatcgctctgccccaggga
cagagtctgcgcctgggcgacctgagcaagcgccaaaagctggtggagatggagttttat
ctgccccttggcggcgatacccagcttatcgataccgagcttagccgcttgctggccaag
cacggctatggcggtgagctgcgcttcgatgccttcaagggcatgctcaaggggtttatc
gatcttacctttgaatatcagggccgtttctacattgccgattataaatccaaccatttg
ggggacgatttcagcgattaccgccaggacaagatggccgcagccatcagcgagcacaga
tacgatctccagtacctgctctacagcctggcgctgcacagatacctgagcctcaaactg
ccggactattgttatcaaagccatttcggcggctgctgttatctgtttttacggggcatg
tccgcagcccatcccggcgccggggtgtttgtggacagaccggatgaagcggtgatcctg
gccctggatgccttactcaagggcgagtcgccctcgagcgcccctcagttggagttgagt
ctatga
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