Shewanella carassii: TUM17387_21650
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Entry
TUM17387_21650 CDS
T07543
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
scaa
Shewanella carassii
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scaa03019
]
TUM17387_21650 (hrpA)
Enzymes [BR:
scaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TUM17387_21650 (hrpA)
Messenger RNA biogenesis [BR:
scaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TUM17387_21650 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
SLFN-g3_helicase
NACHT
nSTAND3
T2SSE
ResIII
HA2_N
PhoH
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BCV66806
LinkDB
All DBs
Position
complement(2433751..2437626)
Genome browser
AA seq
1291 aa
AA seq
DB search
MNAKLHPLSREYLDLCFQADAARIRRSLFRLKKSPDSEAKQQKLAELSEAAVQAYERAQQ
RLADRPVIEYPDELPVSQKRDEIASAIINHQVVIVAGETGSGKTTQLPKICLDLGLGSRG
LIGHTQPRRLAARSVASRVADELKTELGQAVGFKVRFADAVSQDSYIKLMTDGILLAELA
SDKWLSQYDCLIIDEAHERSLNIDFILGYLKQILQKRPDLKLIITSATIDVERFSRHFDN
APVVEVSGRTYPVETRYRPLLQDDDADLDLMDGIFAAVDELCREGPGDILIFMNGEREIR
DTAEQLKKRNLRDTEILPLYARLSYGEQSKVFKPHPGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEQDFINRPEFT
DPEILRTNLASVILQMLAIGLGDIEGFPFIQPPDPRHIRDGFLLLEELQAVSKHKGALKL
TPLGRDLAKIPVDPRLARMVLEANKLGCLHEVMVIVAGLSIQDPRERPHEKKQAADEAHR
RFADKDSDFVAWLNLWQYLKEQQKSLSSSQFRKQVKAEYLAYLRIREWQDLYAQLRQSVH
DLKWRLNSQAADYEPLHQALLSGLLSHIGFKDKDNEYLGARNRRFFVFPGSPLAKKGPKW
IMAAELTETSRLFARTCARIDPVWLESLAAHLVKKQHNEPHFEAKQGSVIALENQVLYGL
TIVNRRRVQFGPLEPVKAREIFIRSALAEGELRCNEAFFKANQALLEEVEDLEHKSRRRD
ILVDTDALFAFYDERIPQGIYNQPKFNTWWKQARRETPELLNFSRELLMQRDDTHVSALD
FPDSWQQGNLSLRLSYHFEPAAEDDGVSVLIPVALLNQLDETDFDWQVPGLREEKCVALI
KSLPKPLRRNFVPAPDYARACVQAMEPFAQPLLPSLCKQLLRMSGTRVNPEDFDLNAIAD
HLKINFKVEDDKGKLLAQSRDLDSLKASLQGQVNQAIRKVADKGIEQNALTEWSFGDLPK
EYQSRKGSYEVKAFPALVDAGDTVSIKLFDDEQQALSHHRQGLRKLLLINIPSPVKHLQQ
ALPNKAKLAMYFNPFGQVQILIDDIIAAAIQQLLDEQKLDVRSADDFAKAKEIVRAELNE
TAAAIALKVEQILTLHQKIRKRLKGKISLDIAFAMSDIQSQLDALVFKGFVEASGWRRLG
DLIRYLKAIELRLDKLPVDPNRDRLHLHSIHNAEKEFKAALAKVPRSQAVPEALAEVRWM
LEEYRVSCFAQSLGTAYPISEKRILNQLQQF
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgctaagctgcacccactctcccgcgaatatctggatctctgctttcaagccgat
gcggcgcgcattcgccgcagcttgttccgcttgaaaaaaagccccgactcagaagccaaa
cagcaaaaactcgccgaactcagtgaagccgcggttcaggcttatgaaagggcgcagcaa
aggctggcagacagaccggtcatcgaatatccggatgagctgccggtgtcacaaaagcgc
gatgaaatcgcctcggccatcatcaatcatcaggtggtgatagtggccggtgaaaccggc
tcgggcaagaccactcagttgcccaaaatctgtctcgacttggggcttggcagccgtggt
ctgattggccacactcagcccaggcgcctagcggcccgcagcgtggccagccgggttgcc
gatgaactcaagacagagctgggtcaggcggtgggttttaaggttcgtttcgccgatgcg
gtttcccaggactcctatatcaagctgatgacagacggtatcctgctggcagaactggca
tcggataaatggctcagtcagtatgattgcctcatcatagacgaggcccatgagcgcagt
ctcaacatcgactttattctgggttatctgaagcaaattttgcaaaagcgcccggatctc
aagttgatcatcacctcggctaccatagatgtggagcgcttttccaggcactttgacaat
gcgcccgtggtggaagtgtccggccgtacttatccggtggaaacccgctatcgccccctg
ttgcaggatgacgacgccgacttggatctgatggacggcatctttgccgccgtcgatgaa
ctctgtcgcgaaggcccgggggacattctgattttcatgaacggcgagcgcgaaatccgc
gataccgccgagcagctgaaaaagcgtaacctgcgcgataccgagatcttgccgctttat
gcccgtttgtcatacggcgagcagtccaaggtattcaagccgcatccagggcggcgtatt
gtactggccaccaacgtggccgaaacctcgctgactgtgccagggatccgctatgttatc
gacccgggtactgccaggataagccgctacagctatcgcaccaaggtgcagcgtttgccg
attgagcccatctcccaggccagtgccaatcaacgccagggacgttgcggccgggttgga
ccggggatctgtattcgcctctatgacgaacaggactttatcaatcggccggagtttacc
gatcctgaaattctgcgcaccaacctggcatccgtgatcctgcagatgctggccataggc
ctgggtgacatcgagggcttccccttcattcagccaccggatccgcgccatatccgcgac
ggtttcctgctgctcgaagagttacaggcggtgagcaagcacaaaggggcgctgaaactg
actccgctcgggcgcgatctggcgaagatcccggtcgatccccgcctggcccgcatggtg
cttgaggccaacaagctgggttgtctgcatgaggtgatggtgattgtcgccgggttatcg
attcaggatccccgcgagcggccccatgagaagaaacaggccgccgatgaggcccatcgc
cgttttgccgataaagactccgactttgttgcctggctcaacctgtggcagtaccttaaa
gagcaacagaagagcctgtcatccagccagttccgcaagcaggtgaaggccgagtatctg
gcctatttgcgtattcgcgaatggcaggatctctatgcccagctgcgtcagagtgtgcac
gacctcaagtggcgcctcaacagtcaggccgccgactatgagccgctgcatcaggcgctg
ctctcggggctgttgagccatatcggcttcaaggataaagacaacgagtatctgggggcc
cgcaaccggcgcttctttgtgtttcccggctcgccgctggccaagaagggccccaagtgg
attatggcggccgagttgactgaaacatcacgcctgttcgcccgtacctgcgcccgcata
gaccctgtatggctcgagtctctggcggcgcatctggtcaagaagcagcacaacgagccc
cattttgaagctaaacagggaagtgtgatcgccctggaaaatcaggtgctctatggcctc
accatagtcaaccgccgccgggtacagtttggcccgctggagccggttaaggctcgggaa
atctttatacgctcggctctggccgagggtgagctgcgctgcaatgaagccttcttcaag
gccaaccaggcgttgctcgaagaggtggaagatctcgagcacaagtcgcggcggcgcgac
attctggtggatacagacgccttgttcgccttctacgatgagcgcattccacaagggata
tacaaccagcccaaattcaacacctggtggaaacaggccaggagagagacccctgagctg
ctcaatttcagccgcgaactcttgatgcaaagggatgacacccatgtatcggcattggac
ttccccgacagctggcagcagggcaaccttagcctcaggctgagttaccattttgaaccg
gcggccgaggatgacggcgtctctgtgcttattccggtggcgctgctcaatcagttggat
gaaaccgattttgactggcaggtgccggggctcagggaggagaagtgtgttgccctgatc
aagtccttgcccaaaccgctgcggcgcaattttgtgccggcaccggattatgcccgcgcc
tgtgtgcaggcgatggaaccttttgcccagcctttgttgccctccctgtgcaaacaactg
ctgagaatgagtggcactcgtgtcaatccggaggatttcgatctcaacgccattgccgac
catctgaagataaacttcaaggtggaagacgataagggcaaactcctggcccagagccgg
gatctcgacagcctcaaggcatcattgcaggggcaggtgaatcaagcgatacgcaaggtt
gccgacaagggcatagagcaaaacgccctgaccgaatggagctttggcgacctgccgaaa
gaatatcaaagccgcaaaggcagctatgaggtgaaggcgttccccgccttggtggatgcc
ggtgatacagtttccatcaaattatttgatgatgaacaacaggcgctttcccaccacaga
caagggctgagaaagctgctgcttatcaatattccatcgccggtgaaacatctacagcag
gccttgcccaacaaggccaaactggcgatgtatttcaatccgttcggccaggtgcaaata
ctgatagatgacattattgccgcggcaattcaacagcttttggatgagcagaagttggat
gtccgaagcgccgatgactttgccaaagccaaggagattgtcagggccgagctcaatgaa
accgcagcggccatcgccctcaaggtggagcagattttgaccttgcaccagaagatccgt
aagcgtctcaagggtaaaatcagcctggatatcgcctttgccatgagtgatattcaaagc
caattggacgccctggtgttcaagggatttgttgaagcttccggttggcgccgtcttggc
gatctgatccgctatctcaaggcgattgagctgcgcctggataaactgccggtggatccc
aaccgtgaccgtttgcacctgcacagtattcacaacgccgaaaaagagttcaaggccgcg
cttgccaaggtgccacgcagccaagcggtaccggaggcgctggccgaggtgcgctggatg
ctggaagagtacagggtcagctgttttgcccagagtctgggcactgcttatccgatatcg
gaaaagcgcatccttaaccagttgcagcagttttaa
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