Shewanella carassii: TUM17387_24630
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Entry
TUM17387_24630 CDS
T07543
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
scaa
Shewanella carassii
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scaa03400
]
TUM17387_24630 (sbcC)
DNA repair and recombination proteins [BR:
scaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TUM17387_24630 (sbcC)
Archaeal homologous recombinant proteins
TUM17387_24630 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
YlqD
AAA_21
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BCV67104
LinkDB
All DBs
Position
complement(2774150..2777332)
Genome browser
AA seq
1060 aa
AA seq
DB search
MRPLILEMRAFGPFADCQRIDFTELGDKPLFLINGPTGAGKTTILDAICFALYGKTTGNE
REGSQMRCDNADDGLLTEVYFSFELGQKRYSIRRCPEQQRAKSRGEGFTLQKSEAELKRL
MPDGTEELLVASKVTDANACIEELTGLDVDQFRQVMVLPQGKFRELLLADSKEREKIFSQ
LFQTHIYRRIEERLKQQALEIKAKARDLQSRRAGILETAGVESLEQLTAEIAALTPSLSE
ATGNKQKASDALAQSAKTLDNAKALTAEFERRKLLQTQLDALELRRAEIELHQQTLENAR
KAEKLLPSLKELQFRQQEWQQAKAKEADYAKQLQSAEQRLKQATDDKATLAELDEHANKL
RRELEQLDKLQPAINELKQLTEEHELGLVELERLERVEQQSHTELEQWQQQQQKLKSEEK
ELCSSAERQGPLHQALAALNTRLEKTEQLGHIKQKWQQAQVSLQQAEAYGHQCKAERQSA
ETEHQRLQLAWHTGQAAILAAKLQPGQPCPVCGGLDHPAPAEMAQDIPGETELNRARDAE
QQASARHEAARSDYRHIKRQTEELQLELQRLSAELHAFIAADVTTGVTADVKTGVTTEAK
ADAAMDADSYAKADLASEIDRLESRRRQLLNELQQAEAAQTRLNNCRKQLQQAEQQVEQR
LKHSETQLKQLQQLREQLSLAGARKDAALAALPNEYHALAAEAALELMARQLEQKQSEWQ
QLKQRQQDINQQYTEAVSQHKALMQALTSSREDSARAEQFAIKAQHALDDALKQSGFADR
QTLEQVQLDEAQMQALAEKIEAWRTQRFEQQALLKAMDERLAGQSLPELGQLESLWQQQQ
QQLAEAESAWQTLNNRMQSLKGTEAQLNKEALAAQALEQEYALIGTLSDVANGNSHSKVS
LQRFVLSVLLDDVLLEASRRLALMSKGRYRLLRKEDRAKGNKASGLELEVEDAYSSKVRP
VATLSGGESFMAALSLALGLSDVVQAYAGGIKLDTLFIDEGFGSLDQDSLELAVRTLMDL
QSSGRMIGVISHVSEMKEQISCRIDISKHALGSSIRLVTA
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgagaccgctgattttggaaatgcgcgccttcggccccttcgccgattgtcagcgcatc
gactttaccgagctgggcgacaagccgctgtttctgatcaatggccccacaggggcgggc
aagaccacgattctggatgccatctgttttgccctgtacggcaaaaccacaggtaacgag
cgagaaggcagccagatgcgctgcgacaatgccgatgacggcctgcttaccgaagtgtat
ttcagttttgaattggggcaaaaacgctacagcattcgtcgttgtcccgagcagcaaaga
gccaaaagccggggcgagggttttaccctgcaaaagagcgaggcggaactcaagcggctg
atgcccgatggcactgaagagttgctggtggccagtaaggtcacggatgccaacgcctgc
atcgaagagttgactggcctggatgtggatcagtttcgccaggtgatggtgctgccccag
ggcaagttccgcgagcttttgctggcagactccaaagagcgggaaaagatcttcagccag
ctgtttcaaacccatatctatcgccgcattgaagagcgcctcaaacagcaggcgctggaa
atcaaggcaaaggccagagacttgcaatcacgccgcgccgggattttggaaactgccggt
gtcgagagtctcgagcagttgacagcggaaattgccgctctgaccccctctttgagcgaa
gcgacaggtaacaaacaaaaagccagcgatgccttggcccagagtgccaagacgctcgat
aacgccaaggcgttaaccgccgagtttgagcgccgcaagctgctgcaaacccagcttgat
gcgcttgagctgcggcgcgctgaaatcgagctgcaccagcagacattggagaatgcccgc
aaggctgaaaagctgctgccaagcctcaaagagttgcagtttcgccagcaggagtggcag
caggctaaagccaaggaggctgactatgccaagcagttgcagagcgccgagcagcgtctg
aaacaggctacagatgacaaggcaacactcgccgagttggatgagcacgctaataagctg
cgacgggagcttgaacaactcgacaagctgcagccggctattaacgagctcaagcaactg
accgaggagcatgagcttggcctagtggagcttgagcgccttgaacgggtagagcagcag
agtcacactgagctggaacaatggcagcagcaacaacaaaagcttaagtcagaggagaag
gaactgtgctcaagcgccgagcgccaagggccgttgcatcaggctctggcggcgttgaac
actcgcctggagaagacggagcagctcgggcacattaagcaaaaatggcagcaagcccaa
gtcagcctgcagcaggccgaggcctatggtcatcaatgcaaggctgaaagacagagcgcc
gaaacggaacatcaaaggttgcaactggcctggcatacaggccaggcggctattctggcg
gccaagctgcagccggggcagccttgccccgtatgcggcggcttggatcacccggcaccg
gccgagatggcgcaggatattccgggtgaaaccgagctcaaccgggcgagagacgccgag
cagcaagcttcggcaaggcatgaggcggcccgcagcgattatcgtcatatcaagcggcaa
accgaggagttgcagctcgagctgcagcgcttgagcgctgagttacacgcctttatcgcc
gcggatgttacgacaggtgttacggctgatgttaagactggtgttacgacagaggctaag
gctgacgccgctatggatgccgactcttatgccaaagccgatctcgctagtgaaatagac
aggcttgagtcccggcgcaggcagctgctcaatgagttgcaacaggccgaagcggctcaa
acccgcctcaataactgcaggaagcaattgcagcaggccgagcagcaagtggagcagcga
ctcaaacacagcgagactcaattaaagcagttgcagcagctaagagagcagttgagtctt
gcgggagcccgtaaagacgcggcgcttgctgctctgcccaatgaatatcatgctttggca
gccgaggcggcgcttgaactgatggcgcggcaacttgagcaaaagcagagtgagtggcaa
cagcttaaacagcgacagcaagatatcaatcaacagtataccgaggccgtcagccagcat
aaggcgctgatgcaggccttgacatcgagccgtgaagacagcgcccgggccgagcagttt
gccatcaaagcgcagcatgcgcttgatgatgccctgaagcaatctggatttgctgatcgc
caaaccttggaacaggtgcagctggatgaagcgcagatgcaggcattggctgagaagata
gaggcctggcgcacgcagcgctttgagcagcaggcgctgctcaaagccatggatgagcgg
ctcgccggacaaagcctgcctgagcttgggcagcttgaaagcctctggcagcaacagcag
cagcaactcgccgaggcggagtctgcttggcagacgctcaataaccgaatgcagagcctg
aaaggcacagaagcccagctcaataaagaagcgctagccgctcaggcgctggagcaggaa
tacgccctaatcggcactctgagtgatgtggccaatggcaacagccatagcaaggtgagt
ctgcagcgctttgtgctcagtgttttgctcgatgatgtgctgctcgaggccagtcgccgt
ttggcgctgatgagcaaaggccgctaccgcttgctgcgtaaagaggacagggccaagggc
aataaggcctctggtctggagcttgaggtggaagatgcttacagctccaaggtgcgtccg
gtggccactctcagcggcggtgagagttttatggcggccttgtcgctggcgctgggactc
tctgatgtggtgcaagcttatgccggtggtatcaagctcgataccctgtttattgatgaa
ggttttggcagcctggatcaggactcgctggagctggcggttcgtaccctgatggatctg
caatccagtggccgcatgataggggttatttcccatgtgtcggagatgaaagagcagata
agctgccgtatagatatcagcaagcatgccttgggcagcagcattcgcctggttacagct
tga
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