Shewanella carassii: TUM17387_28860
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Entry
TUM17387_28860 CDS
T07543
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
scaa
Shewanella carassii
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scaa03016
]
TUM17387_28860 (truB)
Enzymes [BR:
scaa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
TUM17387_28860 (truB)
Transfer RNA biogenesis [BR:
scaa03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
TUM17387_28860 (truB)
Prokaryotic type
TUM17387_28860 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Pus10_C
Motif
Other DBs
NCBI-ProteinID:
BCV67527
LinkDB
All DBs
Position
complement(3263224..3264171)
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AA seq
315 aa
AA seq
DB search
MARRPKGRLVDGIVLLDKDTGMSSNFALQRVKRIYNAAKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYLVTAKLGQRTDTSDSDGEVVQTRPVEFSMAQLEQALEHFRGDSMQ
VPSMYSALKYQGQPLYKYAREGKEVPREARPIHVYELKFISWENDELTLDIHCSKGTYIR
TIIDDLGEMLGCGAHVIMLRRTQVAGYPYERMVSLAQLEALLEQAMTEERVPSELLDPLL
LPMDTAVADLPECNVPDAMAGYLLNGNPVRVAKLEADTLVRITLGDDKRFIGVGMMNDDG
LLAPKRLVVLPEAKN
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtcgtcccaaaggccgtttggtcgatggtatcgtcctgttggataaagacaca
ggcatgagctccaactttgccttgcaaagggtaaagcggatctacaacgccgccaaggcc
ggccataccggcgcgctggatcctctggcgacaggtatgctgcccatctgtcttggcgaa
gccaccaagttttcccagcacctgttggatgccgataaacgttatctggtgacagccaag
cttgggcagcgcaccgataccagcgattctgacggcgaagtggtacaaacccggccggtt
gagttttccatggcccaactggaacaggcgctggagcattttcgtggcgatagcatgcag
gtgccttccatgtactcagcgctcaagtatcagggccaacccttgtacaagtacgcccgg
gaaggcaaggaagtaccccgtgaagctaggcctattcacgtctatgagctcaagtttatc
tcttgggagaatgatgagctgacgctggatattcactgctccaagggcacgtatattcgc
accataatagatgacttgggtgaaatgcttggttgcggcgcccatgtgatcatgctgcgc
cgcactcaggtggcgggttatccctatgagcgcatggttagtttggcacagctcgaagcc
ttgctggaacaggccatgaccgaagaacgggtgccttccgaactgttggaccctttgttg
ctcccaatggacacagcggtagccgaccttccagagtgcaatgttcccgatgccatggct
ggttatctgctcaatggtaacccggtgcgggtcgccaagctggaggccgatactctggtg
cggatcaccttgggtgacgacaagcgctttatcggtgttggcatgatgaatgatgatggt
ttgttggctcccaagcgtttggtcgtactgccagaagcaaaaaactga
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