Shewanella carassii: TUM17387_29540
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Entry
TUM17387_29540 CDS
T07543
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
scaa
Shewanella carassii
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scaa03400
]
TUM17387_29540 (phrB)
Enzymes [BR:
scaa01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
TUM17387_29540 (phrB)
DNA repair and recombination proteins [BR:
scaa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
TUM17387_29540 (phrB)
Prokaryotic type
TUM17387_29540 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
BCV67595
LinkDB
All DBs
Position
complement(3338539..3340038)
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AA seq
499 aa
AA seq
DB search
MSQSLPNHVPSSEKACVAIWFRSDLRTSDNQALWLACEAARAQGLPLRGFYIATPAQWQQ
HSVGPMQLDFIERSINQLQRALASLGIAFDLLHCDDFSWVNVTVEAYCQRLGVKQIFAGR
EVEINEQRRDQALAQLTRTIGVGLQFTDEHCLLPPGSVRTQGGEMYRVFTPFFRRWRELL
GSEAIMPLPVPAPLAPALPEPAELSFKVSNQGSKQDSHLWPVGEGAARQRLDSFIANQLA
DYGQERDFPALDGTSCLSPYLAFGILSPRQCVAALLNRFPEAMAEDNSPGRSWLAELAWR
EFYRHLLHAWPQLCMGRNFNSLGDDIVWRNDPQEFAAWCEGRTGFPLVDAAMRQLNQTGW
MHNRLRMVTASFLTKHLLVDWRWGEQYFRRTLIDGDLAANNGGWQWSAGTGCDAQPYFRI
FNPMSQSEKFDPDASFIRRYLPELAHWSLKQIHHPGTAASSRFTEPSLFATAAYPPPIVE
HSAARQRALKALAVLKKSA
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagtccttgcccaatcatgtgccttccagtgaaaaggcctgtgttgccatctgg
tttcgcagcgatctgcgcacttcagataaccaggccctgtggctggcgtgcgaagcggca
agggcccaaggtctgccgctgcggggtttttatattgcgactccggcccagtggcagcag
cactctgttggtcccatgcagctggatttcatcgagcgcagcatcaatcaactgcaacgg
gcgttggcatctttggggatagcttttgatttgctgcactgtgacgatttctcttgggtg
aatgtcactgtcgaggcgtattgccaacgcctgggcgttaagcagatttttgccgggcgc
gaggtggagattaacgagcagcgccgggatcaggcgctggcgcagcttaccaggactata
ggggtgggcctgcagtttaccgatgagcactgtctgctgccgcccggcagcgtccgtacc
caaggtggcgaaatgtatcgggtatttacccctttctttcgccgctggcgtgagctgctg
ggaagtgaggcgataatgccgctgccggtacctgcgcctctggccccggctttacccgaa
cccgcagagctgagttttaaggtcagcaatcaaggcagtaaacaagacagccacctctgg
ccagtgggtgaaggggcggccaggcagcgcctcgatagctttattgccaaccagcttgcc
gattacggccaggagcgggatttcccggcgctcgatggcaccagttgcctgtcgccctat
ctggcgtttggtattctcagcccgcggcaatgtgtggcggcgctgctcaatcgcttcccc
gaggctatggcagaggacaatagtccgggtcgcagctggctggctgagctggcctggcgc
gagttttaccgccatctgctgcatgcctggccccagctgtgtatggggcgcaacttcaac
tcactcggtgatgacatagtctggcggaacgacccgcaagagtttgccgcctggtgcgag
ggccgcaccggttttccgctggtggatgccgccatgcgtcagctaaaccagactggctgg
atgcacaatcggctgcgaatggtgaccgccagcttcctcaccaaacacctattggtggac
tggcgctggggcgagcagtattttcggcgcaccctgatcgatggcgacctggcggccaat
aacggcggctggcagtggtctgccggcaccggctgtgatgcccagccctatttcaggatc
ttcaaccccatgagccagagtgaaaagttcgaccctgacgccagttttatccgccgttat
ctgcccgaactggcgcactggtcgcttaaacagatacaccatccgggcacagctgcatcg
tcccgcttcaccgagccgagtctgtttgccactgcggcttacccgccacctatagtcgag
cacagcgcggcgcggcaaagggcgttgaaggccctggccgtgctgaaaaagtctgcctga
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