Shewanella carassii: TUM17387_30310
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Entry
TUM17387_30310 CDS
T07543
Symbol
ligT
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
scaa
Shewanella carassii
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scaa03016
]
TUM17387_30310 (ligT)
Enzymes [BR:
scaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
TUM17387_30310 (ligT)
Transfer RNA biogenesis [BR:
scaa03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
TUM17387_30310 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
DUF3944
Motif
Other DBs
NCBI-ProteinID:
BCV67672
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All DBs
Position
3421134..3421616
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AA seq
160 aa
AA seq
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MLKLQQACEQADEPSAPGLKKVTEANLHLTLAFLGQVTAEQLEDLLAAIPGLPLKRFRVR
LEHLCFWPGPKILCLAGIAEDPALMALAGAAQQLAAALGLHSSEYDYRPHITLMRRAGNL
PKLEDVPTLDLTPSELQLYESLSTPTGVEYRILASWPLSD
NT seq
483 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaagttgcagcaagcttgtgaacaagctgatgaaccgtcagccccaggtctcaag
aaagtgactgaggccaatctgcatctcaccctggcgtttctcggccaggtgacggcagaa
cagctcgaggatttactcgccgccattcccggcttgcccttgaaacgctttcgggtgcgg
ctcgagcatctctgcttctggcccgggccgaaaatactctgcctggccgggatagccgaa
gatccggcgttaatggcgctcgccggggcggcgcaacaactggcggccgccctggggttg
catagcagcgaatatgattaccggccccatatcaccttgatgcgaagggccggcaaccta
ccgaaactcgaagatgttccaacgctcgatttaacgccaagcgagctgcaactctacgag
tctttgagtactccgaccggcgtcgagtaccggatattggccagctggccgttaagcgac
tga
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