Shewanella carassii: TUM17387_31120
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Entry
TUM17387_31120 CDS
T07543
Symbol
fadD_2
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
scaa
Shewanella carassii
Pathway
scaa00061
Fatty acid biosynthesis
scaa00071
Fatty acid degradation
scaa01100
Metabolic pathways
scaa01212
Fatty acid metabolism
scaa02024
Quorum sensing
scaa04146
Peroxisome
Module
scaa_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
TUM17387_31120 (fadD_2)
00071 Fatty acid degradation
TUM17387_31120 (fadD_2)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
TUM17387_31120 (fadD_2)
09145 Cellular community - prokaryotes
02024 Quorum sensing
TUM17387_31120 (fadD_2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
scaa01004
]
TUM17387_31120 (fadD_2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scaa04147
]
TUM17387_31120 (fadD_2)
Enzymes [BR:
scaa01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
TUM17387_31120 (fadD_2)
Lipid biosynthesis proteins [BR:
scaa01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
TUM17387_31120 (fadD_2)
Exosome [BR:
scaa04147
]
Exosomal proteins
Exosomal proteins of breast milk
TUM17387_31120 (fadD_2)
Exosomal proteins of breast cancer cells
TUM17387_31120 (fadD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
BCV67753
LinkDB
All DBs
Position
3507435..3509051
Genome browser
AA seq
538 aa
AA seq
DB search
MTRVIQNQVYDTQTQLDFSRYESLADMIVSSCERYGDKNAFACLGKAISFRELERDSRAF
AAFLQHNTQLQVGDRIAIQLPNINQFVIAAYGAIRAGLVLVNTNPLYTERELIHQFKDSG
AKALVVLSDLLPILAKVVASTPIETVISTHPLDLIEPQIQPKTGLKNLEFTKVLEQGREL
EFTEVKLKLDDLVALQYTGGTTGLSKGAMLSHRNLIANALQCESRIGANLVQGEEIFVAP
LPIYHIYAFLVNLVLYFERGALTVLIPNPRDIASLIKTLAKYPFTGFAGLNTLFVGLCHQ
QAFRELDFSHLKITISGGTALTEAAAKIWQQTTGCTISEGYGLSETSPVISLNAPGLERL
GSIGKPVIETQVQILDGNDQPLPPGQAGELAVRGPQVMSGYWQKPDETAAVMTEDGFFKT
GDIAIESEDGYHSIVDRKKDLIIVSGFNVYPNEVENVLARCDLVLECAVIGIEDERSGEA
VKAVIVLKPEVDAANAQAAIEAHCRAELAAYKVPKVVEFVAQLPKSTVGKILRRELRK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgacaagagtgatacagaatcaggtatacgatacccagactcaattggatttttcccgc
tatgagtcgcttgcggatatgattgtcagcagctgtgagcgttacggcgacaagaacgcc
tttgcctgcctcggtaaggccatcagctttcgtgaactggaacgagactctcgtgccttc
gccgctttcctgcagcacaacacccaactgcaagtcggcgatcgcatcgccatccagctg
cccaatatcaaccaatttgtcattgccgcctatggcgcaattcgcgcaggcctggtgcta
gtaaataccaaccccttgtatactgagcgagaattgatccatcaattcaaggactcaggc
gccaaggcgctggtggtactgtcggatctcctgccaattttggccaaggtcgttgccagc
accccgattgaaactgtgatttccacccatccactggatctgatcgagccacaaattcaa
ccgaaaaccggtttgaaaaacctcgaatttaccaaggttcttgaacagggacgagagctg
gaattcaccgaagtaaagctgaagctggacgatctggtggcgctgcaatacacgggcggt
accacaggcctttccaagggagccatgctcagccacagaaacctgatcgccaacgccctg
caatgtgaatcccgcatcggcgccaacctggttcagggggaagagatcttcgtcgccccg
ctgcccatctatcatatttacgcctttttggtgaatctggtgctctacttcgagcgcggc
gccctgacagtactgatccccaacccgagggatatcgcctcactgatcaagaccttggcc
aagtatccctttaccggcttcgccgggctcaacaccttgtttgttggcctatgccaccag
caagccttccgtgagctggacttctcccatctgaagatcactatttccggcggtaccgcc
cttaccgaagccgcggccaaaatctggcaacaaactactggctgcaccatatctgaaggt
tatggtctgagtgagacctcgccggttatctccctcaacgcccctgggctagagcgtctt
ggcagcataggcaagccggttatcgaaactcaggtgcaaattctcgatggcaatgaccag
ccgctgccgcctgggcaagccggtgaactggcggtgcgcggccctcaggtgatgagtggc
tactggcaaaagcccgatgaaactgcggccgtaatgacagaagatggcttcttcaagaca
ggagatatcgccatcgagagcgaagatggttaccacagcatagtggatcgcaagaaagat
ctgattatcgtctccggcttcaatgtttaccccaacgaagtcgaaaacgtgctggctcgt
tgcgacttggtactcgaatgcgcggttatcggtattgaagatgaacgcagcggcgaagcc
gtcaaggcggtaatagtgctcaaaccggaggtcgatgccgccaatgctcaagcagccatt
gaagcccactgccgggcagagctcgcggcctacaaggtgcccaaggtggtagagtttgtc
gcccagttgcccaagagtacggtcggcaaaatactcaggcgcgaactgcgcaaataa
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