| Entry |
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| Name |
(GenBank) CDC48 family AAA ATPase
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| KO |
| K13525 | transitional endoplasmic reticulum ATPase |
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| Organism |
scab Sphingomonas cannabina
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| Pathway |
| scab04141 | Protein processing in endoplasmic reticulum |
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| Brite |
KEGG Orthology (KO) [BR:scab00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
LZK98_01700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:scab03019]
LZK98_01700
03009 Ribosome biogenesis [BR:scab03009]
LZK98_01700
04131 Membrane trafficking [BR:scab04131]
LZK98_01700
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:scab04147]
LZK98_01700
Messenger RNA biogenesis [BR:scab03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
LZK98_01700
Ribosome biogenesis [BR:scab03009]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
LZK98_01700
Membrane trafficking [BR:scab04131]
SNARE
SNARE associated proteins
Others
LZK98_01700
Autophagy
Aggrephagy
Other aggrephagy associated proteins
LZK98_01700
Exosome [BR:scab04147]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LZK98_01700
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
333924..336224
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| AA seq |
766 aa
MADDETRGRKLQVANARPEDSGRGLAHIPRAMMAALGITEGDVIEIVGKRVTPARAVLPY
AEDEGLEILRIDGLQRANAGAGSGDFVEVRRAESKPATRVVFAPASKNVRLQGSGLALQR
SFAGRPLTAGDTVATVGQQRVPGSDVPPHIAQYLRAPAYALQEIRMIVVSTAPKGIVHID
ESTEIELRSDYEEPKESRRADVTYDDVGGMAATIDQLREMVELPLRYPELFQRLGVDPPK
GVLLHGPPGTGKTRLARAVANESDASFFLINGPEIMGSAYGESEKRLREVFEEAAANAPS
IVFIDEIDSIAPKRGQVQGEAEKRLVAQLLTLMDGLEARANIVIIAATNRPEALDEALRR
PGRFDREIIVGVPDERGRREILGIHTRGMPLGDRVDLGELARTTYGFVGADLAALAREAA
IESVRRIMPKLNLEEGTIPPEVLDTLAVTREDFLEALKRVQPSAMREVMVQAPQVRWEDV
GGLDQAQERLKEGVELPLKDPDAFRRIGIRPAKGFLLYGPPGTGKTLLAKAVAREAEANF
IATKSSDLLSKWYGESEQQIARLFARARQVAPCVIFIDELDSLVPARGGGLGEPQVTERV
VNTILAEMDGLEELQSVVVIGATNRPNLVDPALLRPGRFDELIYVGVPNQEGRRRILDIQ
TQKMPLAEDVDLDSIAARAERFTGADLEDIVRRAGMIALRKSLGAKTVSMADFEEALEES
RASVTPEMEEEYRRMSSQLKQDAVAIQPIGFIAPGTLQGRGPKSAD |
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| NT seq |
2301 nt +upstreamnt +downstreamnt
atggccgacgacgaaacgcgcgggcgcaagctgcaggtagccaacgcccggcccgaggac
agcggccgcgggcttgcccatatcccccgcgccatgatggcggcgctcggcatcactgag
ggcgacgtgatcgagattgtcggcaagcgcgtgacgcccgcccgcgcggtgctgccctat
gccgaggacgaggggctggagatcctgcgcatcgacggcctccagcgcgccaacgccggc
gccggatcgggcgatttcgtcgaggtgcgccgcgccgaatcgaagccggcgacgcgggtg
gtgttcgcgccggcctccaagaacgtccgcctccagggctcggggctcgcgctccagcgc
agcttcgccgggcgaccgctcaccgccggtgacaccgtcgccaccgtcggccagcagcgc
gtccccggcagcgacgtgccgccgcacatcgcccagtatctccgcgcgcctgcttatgcc
ctgcaggaaatccgcatgatcgtggtgtcgaccgcgcccaagggcatcgtccatatcgac
gaatccaccgagatcgaactgcggtccgattacgaggagcccaaggaaagccgccgcgcc
gatgtgacctacgacgacgtcggcggcatggccgccacgatcgatcagctgcgcgagatg
gtcgagctgccgctgcgctatcccgagctgttccagcgcctgggcgtcgatccgcccaag
ggcgtgctgctccacggcccgcccggcaccggcaagacccggctcgcgcgtgcggtcgcc
aatgaaagcgatgccagcttcttcctgatcaacgggcccgagatcatgggctcggcctat
ggcgagtcggagaagcggctgcgcgaggtgttcgaggaggcggccgccaacgcgccatcg
atcgtgttcatcgacgagatcgattcgatcgcccccaagcgcgggcaggtgcagggcgag
gccgagaagcgcctcgtcgcccagctgctcaccttgatggacgggctggaggcgcgcgcc
aacatcgtcatcatcgccgcgaccaaccggcccgaggcgctcgacgaggcgctgcgccgg
cccggccgcttcgaccgcgagatcatcgtgggcgtcccggacgagcgcgggcggcgcgag
atcctgggcatccatacgcgcggcatgccgctcggcgaccgggtcgacctgggcgagctc
gcgcgcaccacctatggcttcgtcggcgccgacttggccgcactcgcccgtgaggcggcg
atcgaatcggtgcggcggatcatgccgaagctcaatctcgaggaggggacgatcccgccc
gaggtgctcgacacgctcgccgtcacccgcgaggatttcctggaggcgctgaagcgcgtc
cagccctcggcgatgcgcgaggtgatggtgcaggcgccgcaggtgcgctgggaggacgtc
ggcgggctcgaccaggcgcaggaacgcctgaaggagggcgtcgagctgccgctcaaggac
cccgacgcgttccgccgcatcggcatccgtccggccaagggcttcctgctctatggcccg
cccggcaccggcaagacgctgcttgccaaggcggtggcgcgcgaggcggaggcgaacttc
atcgccaccaagtcgtccgacctgctcagcaaatggtacggcgagagcgagcagcagatc
gcccgcctgttcgcccgcgcgcgccaggtggcgccgtgcgtgatcttcatcgacgagctc
gattcgctggtccccgctcgcggcggcggcctcggcgagccgcaggtcaccgagcgggtg
gtcaacaccatcctcgccgagatggacgggctcgaggagctgcagtcggtggtggtgatc
ggcgcgaccaaccggccgaacctggtcgacccggcgctgctgcgtcccggccgcttcgac
gaactgatctacgtcggcgtgccgaaccaggaggggcggcggcgtatcctcgacatccag
acgcagaagatgccgctggccgaggacgtcgacctcgattcgatcgccgcgcgggccgag
cgcttcaccggcgccgacctggaggacatcgtccgccgcgccggcatgatcgcgctgcgc
aagtcgctgggcgcgaaaacggtgtcgatggccgatttcgaggaggcactcgaggaatcg
cgcgcctcggtcacgccggagatggaggaggagtatcggcggatgtcgtcgcagctcaag
caggatgcggtggcgatccagccgatcggcttcatcgcgccggggacgctccagggccgg
ggaccgaagagcgcagattag |
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