Sphingomonas cannabina: LZK98_01700
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Entry
LZK98_01700 CDS
T08607
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
scab
Sphingomonas cannabina
Pathway
scab04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
LZK98_01700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scab03019
]
LZK98_01700
03009 Ribosome biogenesis [BR:
scab03009
]
LZK98_01700
04131 Membrane trafficking [BR:
scab04131
]
LZK98_01700
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scab04147
]
LZK98_01700
Messenger RNA biogenesis [BR:
scab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
LZK98_01700
Ribosome biogenesis [BR:
scab03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
LZK98_01700
Membrane trafficking [BR:
scab04131
]
SNARE
SNARE associated proteins
Others
LZK98_01700
Autophagy
Aggrephagy
Other aggrephagy associated proteins
LZK98_01700
Exosome [BR:
scab04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LZK98_01700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
CDC48_2
AAA_22
AAA_33
AAA_2
AAA_14
TIP49
IstB_IS21
AAA_28
nSTAND3
AAA_18
RNA_helicase
NPHP3_N
Mg_chelatase
AAA_7
DUF815
AAA_24
AAA_30
TsaE
Sigma54_activat
AAA_19
AAA_11
Vps4_C
AAA_3
ABC_tran
AAA_17
Parvo_NS1
Zeta_toxin
NB-ARC
PhoH
SLFN-g3_helicase
ATPase
Viral_helicase1
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
UIJ45702
LinkDB
All DBs
Position
333924..336224
Genome browser
AA seq
766 aa
AA seq
DB search
MADDETRGRKLQVANARPEDSGRGLAHIPRAMMAALGITEGDVIEIVGKRVTPARAVLPY
AEDEGLEILRIDGLQRANAGAGSGDFVEVRRAESKPATRVVFAPASKNVRLQGSGLALQR
SFAGRPLTAGDTVATVGQQRVPGSDVPPHIAQYLRAPAYALQEIRMIVVSTAPKGIVHID
ESTEIELRSDYEEPKESRRADVTYDDVGGMAATIDQLREMVELPLRYPELFQRLGVDPPK
GVLLHGPPGTGKTRLARAVANESDASFFLINGPEIMGSAYGESEKRLREVFEEAAANAPS
IVFIDEIDSIAPKRGQVQGEAEKRLVAQLLTLMDGLEARANIVIIAATNRPEALDEALRR
PGRFDREIIVGVPDERGRREILGIHTRGMPLGDRVDLGELARTTYGFVGADLAALAREAA
IESVRRIMPKLNLEEGTIPPEVLDTLAVTREDFLEALKRVQPSAMREVMVQAPQVRWEDV
GGLDQAQERLKEGVELPLKDPDAFRRIGIRPAKGFLLYGPPGTGKTLLAKAVAREAEANF
IATKSSDLLSKWYGESEQQIARLFARARQVAPCVIFIDELDSLVPARGGGLGEPQVTERV
VNTILAEMDGLEELQSVVVIGATNRPNLVDPALLRPGRFDELIYVGVPNQEGRRRILDIQ
TQKMPLAEDVDLDSIAARAERFTGADLEDIVRRAGMIALRKSLGAKTVSMADFEEALEES
RASVTPEMEEEYRRMSSQLKQDAVAIQPIGFIAPGTLQGRGPKSAD
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgacgaaacgcgcgggcgcaagctgcaggtagccaacgcccggcccgaggac
agcggccgcgggcttgcccatatcccccgcgccatgatggcggcgctcggcatcactgag
ggcgacgtgatcgagattgtcggcaagcgcgtgacgcccgcccgcgcggtgctgccctat
gccgaggacgaggggctggagatcctgcgcatcgacggcctccagcgcgccaacgccggc
gccggatcgggcgatttcgtcgaggtgcgccgcgccgaatcgaagccggcgacgcgggtg
gtgttcgcgccggcctccaagaacgtccgcctccagggctcggggctcgcgctccagcgc
agcttcgccgggcgaccgctcaccgccggtgacaccgtcgccaccgtcggccagcagcgc
gtccccggcagcgacgtgccgccgcacatcgcccagtatctccgcgcgcctgcttatgcc
ctgcaggaaatccgcatgatcgtggtgtcgaccgcgcccaagggcatcgtccatatcgac
gaatccaccgagatcgaactgcggtccgattacgaggagcccaaggaaagccgccgcgcc
gatgtgacctacgacgacgtcggcggcatggccgccacgatcgatcagctgcgcgagatg
gtcgagctgccgctgcgctatcccgagctgttccagcgcctgggcgtcgatccgcccaag
ggcgtgctgctccacggcccgcccggcaccggcaagacccggctcgcgcgtgcggtcgcc
aatgaaagcgatgccagcttcttcctgatcaacgggcccgagatcatgggctcggcctat
ggcgagtcggagaagcggctgcgcgaggtgttcgaggaggcggccgccaacgcgccatcg
atcgtgttcatcgacgagatcgattcgatcgcccccaagcgcgggcaggtgcagggcgag
gccgagaagcgcctcgtcgcccagctgctcaccttgatggacgggctggaggcgcgcgcc
aacatcgtcatcatcgccgcgaccaaccggcccgaggcgctcgacgaggcgctgcgccgg
cccggccgcttcgaccgcgagatcatcgtgggcgtcccggacgagcgcgggcggcgcgag
atcctgggcatccatacgcgcggcatgccgctcggcgaccgggtcgacctgggcgagctc
gcgcgcaccacctatggcttcgtcggcgccgacttggccgcactcgcccgtgaggcggcg
atcgaatcggtgcggcggatcatgccgaagctcaatctcgaggaggggacgatcccgccc
gaggtgctcgacacgctcgccgtcacccgcgaggatttcctggaggcgctgaagcgcgtc
cagccctcggcgatgcgcgaggtgatggtgcaggcgccgcaggtgcgctgggaggacgtc
ggcgggctcgaccaggcgcaggaacgcctgaaggagggcgtcgagctgccgctcaaggac
cccgacgcgttccgccgcatcggcatccgtccggccaagggcttcctgctctatggcccg
cccggcaccggcaagacgctgcttgccaaggcggtggcgcgcgaggcggaggcgaacttc
atcgccaccaagtcgtccgacctgctcagcaaatggtacggcgagagcgagcagcagatc
gcccgcctgttcgcccgcgcgcgccaggtggcgccgtgcgtgatcttcatcgacgagctc
gattcgctggtccccgctcgcggcggcggcctcggcgagccgcaggtcaccgagcgggtg
gtcaacaccatcctcgccgagatggacgggctcgaggagctgcagtcggtggtggtgatc
ggcgcgaccaaccggccgaacctggtcgacccggcgctgctgcgtcccggccgcttcgac
gaactgatctacgtcggcgtgccgaaccaggaggggcggcggcgtatcctcgacatccag
acgcagaagatgccgctggccgaggacgtcgacctcgattcgatcgccgcgcgggccgag
cgcttcaccggcgccgacctggaggacatcgtccgccgcgccggcatgatcgcgctgcgc
aagtcgctgggcgcgaaaacggtgtcgatggccgatttcgaggaggcactcgaggaatcg
cgcgcctcggtcacgccggagatggaggaggagtatcggcggatgtcgtcgcagctcaag
caggatgcggtggcgatccagccgatcggcttcatcgcgccggggacgctccagggccgg
ggaccgaagagcgcagattag
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