Sphingomonas cannabina: LZK98_01960
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Entry
LZK98_01960 CDS
T08607
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
scab
Sphingomonas cannabina
Pathway
scab03030
DNA replication
scab03410
Base excision repair
scab03420
Nucleotide excision repair
scab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LZK98_01960 (polA)
03410 Base excision repair
LZK98_01960 (polA)
03420 Nucleotide excision repair
LZK98_01960 (polA)
03440 Homologous recombination
LZK98_01960 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scab03032
]
LZK98_01960 (polA)
03400 DNA repair and recombination proteins [BR:
scab03400
]
LZK98_01960 (polA)
Enzymes [BR:
scab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LZK98_01960 (polA)
DNA replication proteins [BR:
scab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LZK98_01960 (polA)
DNA repair and recombination proteins [BR:
scab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LZK98_01960 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LZK98_01960 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
DNA_polI_exo1
HHH
DprA_N
Motif
Other DBs
NCBI-ProteinID:
UIJ45752
LinkDB
All DBs
Position
381277..384033
Genome browser
AA seq
918 aa
AA seq
DB search
MPHLYLVDGSGYIFRAYHRLPPLTNKHGEPVGAVYGYTTMLWKLADELHKAEGPTHMAVI
LDKSEHTFRNELYDQYKAHRPPAPEDLVPQFPMIRDATRAFSLPCIEEQGWEADDLIASY
AKAALAQGWQVTIVSSDKDLMQLIEPGLDLYDTMNNRRLGPEAVVEKFGVGPDKLGEVLA
LMGDSVDNVPGVPGVGPKTAAKLILEHGDVEAVLAAAPSMKPGKLRDNLIEHAEMARLSR
KLVTLACDVPLPDPLDALELKGIPDAPLRAFLEHHGFRSLIAKLSAVADAPVETPTLPIA
QEEDPPCDHDAYETVVDEAALDRWIEQARYQGHVAIDTETTGVDATRAELVGVSLALAPN
QACYVPVGHGGSDMFAEKPVQLDRELVLARLKPLLEDPAVLKIGHNLKYDLIVLGRLGIE
VAPYDDTIVMSFNLDSGLHGHGMDELAATHLSHSCIAYKDVVGTGKKQLGFHEVDLKAAT
RYAAEDADVTLRLWRRFKPRLPFESVTRVYEMVDRPLPAVIAGMERAGVKVDADILSRLS
TEFSHQIAALEDEIHAIAGFKFTIGSPKQLGDVLFDKMGIKGGRKGKSGVYSTDVNELER
IAADKDSPGREMVQKVLDWRQLTKLKSTYTDALQAQINPATGRVHTSYSLTGAQTGRLSS
TDPNLQNIPIRTEVGRQIRDAFVAEPGNVILAADYSQIELRLAAHIADVDPLRQAFLNGD
DIHNMTAMELFGELNRDTRARAKTINFAILYGISRWGLAGRLDVTPDEAQAMIDRYFERF
PGINRYIADTLREAKERGYTTTLFGRKTHFPRLKSPNPNERGGSERAAINAPIQGTSADI
IKRAMARMGPALAAAGLPRVRMLMQVHDELVFELPESDVEAATPIIRDVMARAAEPAVEL
TVPLGIDIGVGPSWGAAH
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgccccacctctacctggtcgatggctccggctacatcttccgcgcctatcaccggctg
ccgccgctcacaaacaagcacggcgagccggtcggcgccgtctacggctacaccaccatg
ctgtggaagctcgccgacgagctgcacaaggccgaggggccgacgcacatggcggtgatc
ctcgacaagtccgagcacaccttccgcaacgagctctacgaccagtacaaggcacaccgc
ccgcccgcgcccgaggacctggtgccgcagttcccgatgatccgcgacgcgacgcgcgcc
ttctcgctgccgtgcatcgaggagcagggctgggaggcggacgacctcatcgcctcctat
gccaaggcggcgcttgcgcagggctggcaggtgacgatcgtcagctccgacaaggatctg
atgcagctgatcgagccggggctcgacctctacgacacgatgaacaaccgccggctgggg
ccggaagcggtggtcgagaagttcggcgtcggtccggacaagctcggcgaggtgctggcg
ctgatgggcgacagcgtcgacaacgtccccggcgtgcccggcgtcggccccaagaccgcg
gccaagctgattctggaacatggcgacgtcgaagcggtgctcgccgccgcgccgtcgatg
aagccgggcaagctgcgcgacaacctcatcgaacatgccgagatggcgcggctcagccgc
aagctggtgacgctcgcctgcgacgtgccgctgcccgatccgctcgatgcgctcgagctc
aaggggatacccgatgcgccgctgcgcgccttcctcgagcatcacggtttccgctcgctg
atcgccaagctgtcggcggtggcggacgcgccggtcgagacgccgacgctgccgatcgcg
caggaggaggacccgccctgcgaccacgacgcctatgagacggtggtggacgaggccgcg
ctcgatcgctggatcgagcaggcgcgctaccagggccatgtcgcgatcgataccgagacc
accggcgtcgacgccacccgcgccgagctggtcggcgtcagcctagcgctcgcgccgaac
caggcctgctacgtccccgtcggccacggcggcagcgacatgttcgccgagaagccggtg
cagctcgatcgcgagctggtgctggcgcggctgaagccgctgctcgaggacccggcggtg
ctcaagatcgggcacaacctcaaatacgacctgatcgtgctcggccggttgggaatcgag
gtcgcgccctatgacgacacgatcgtgatgagcttcaacctcgattcggggctgcacggc
cacggcatggacgagctcgccgcgacccacctttcgcacagctgcatcgcctacaaggac
gtggtcgggacgggcaagaagcagctcggcttccacgaggtcgatctcaaggccgccacc
cgctacgctgccgaggatgccgacgtgacgctcaggctgtggcgccgcttcaagccgcgg
ctgccgttcgagagcgtcacgcgggtgtatgagatggtcgaccggccgctgccggcggtg
atcgccggcatggagcgcgcgggcgtcaaggtcgatgccgacatcctttcgcggctctcg
accgaattctcgcaccagatcgcggccctcgaggacgagatccacgccatcgccggcttc
aagttcacgatcggcagccccaagcagctgggcgacgtgctgttcgacaagatggggatc
aagggcgggcgcaagggcaagtcgggggtctattcgaccgacgtcaacgagctcgaacgg
atcgccgccgacaaggattcgcccggacgcgagatggtgcagaaggtgctcgactggcgc
cagctcaccaaattgaagtcgacctacaccgacgcgctccaggcgcagatcaacccggcg
acgggccgtgtccacaccagctattcgctgaccggcgcgcagaccgggcgcctttcctcg
accgatcccaatctgcagaacatcccgatccggaccgaggtcggccggcagattcgcgac
gccttcgtcgccgagccaggcaatgtcattctcgccgccgactattcgcagatcgagctc
aggctcgccgcgcacatcgctgacgtcgatccgctgcgccaggcgttcctgaacggcgac
gacatccacaacatgacggcgatggagctgttcggcgaactcaaccgcgacacccgcgcg
cgggccaagacgatcaacttcgcgatcctctacggcatctcgcgctgggggctcgccggt
cggctcgacgtcacgcccgacgaggcgcaggcgatgatcgaccgctatttcgagcgcttc
cccggcatcaaccgctacatcgccgacacgctgagggaagccaaggagcgcggctacacc
accacgctgttcgggcggaagacgcatttcccgcgcctcaagtcgcccaaccccaacgag
cgcggcggatcggaacgcgccgcgatcaacgcgccgatccagggcaccagcgccgacatc
atcaagcgcgcgatggcgcggatgggcccggcgctcgccgccgcagggctgccgcgtgtc
cggatgctgatgcaggtgcacgacgagctggtgttcgagctgcccgaaagcgatgtcgaa
gcggcgacgccgatcatccgcgatgtgatggcccgcgctgccgagcccgcggtcgagctc
acagtgccgctcggcatcgacatcggcgtgggcccgagctggggcgcggcgcattga
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