Sphingomonas cannabina: LZK98_02225
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Entry
LZK98_02225 CDS
T08607
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
scab
Sphingomonas cannabina
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scab03016
]
LZK98_02225 (truB)
Enzymes [BR:
scab01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
LZK98_02225 (truB)
Transfer RNA biogenesis [BR:
scab03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LZK98_02225 (truB)
Prokaryotic type
LZK98_02225 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
UIJ47310
LinkDB
All DBs
Position
complement(438461..439462)
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AA seq
333 aa
AA seq
DB search
MHGWVILDKPVGPGSTEAVSAVKRALRAGGYGKIKVGHGGTLDPLASGVLPVALGEATKL
AGRMLDSDKAYDFTIRFGEETDTLDAEGEVVATSKVRPTHAEVEAVLPRFTGPISQVPPA
YSALKVDGKRAYDLARAGEMVALASRDVVVHALSSSPARGGGPSRSDGGGGPATNDSLVT
GPLHHSPSASGPPPRAGEELEDITLSAHVSKGTYIRSLARDIARALGTVGHVTMLRRTKA
GPFGLDSAISLDKLAELGNGRRLEQILLPLRAGLDDIPALPLDPDQAGALRQGRVLAGIA
RDDGLHFAMLGETPVALVEVESGQARVVRGFNL
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcacggctgggtgatcctcgacaagccggtcggaccgggctcgaccgaagccgtatcg
gcggtcaagcgggcgctgcgcgcgggcggctacggcaagatcaaggttggccacggcggc
acgctcgatccgctcgcctcaggcgtgctcccggtcgcgctgggcgaggcgaccaagctt
gccgggcggatgctcgacagtgacaaggcttatgatttcacgatccgcttcggcgaggag
accgacacgctcgatgcggaaggtgaggtggtcgcgacctcgaaggtgcgtccgacgcat
gcggaggtcgaggcggtgctgccccgcttcaccggcccgatcagccaggtaccgcccgcc
tattcggcgctcaaggtcgacggcaagcgtgcctatgaccttgcccgcgcaggggagatg
gtggcgctggccagccgggacgtggtggtgcacgccctaagctcctccccggcacgggga
gggggaccatcgcgcagcgatggtggagggggcccagccacgaacgattcgcttgtgacg
ggccccctccaccactcgccttcggcgagcggtccccctccccgtgccggggaggagctt
gaagacatcaccctctccgcccatgtctcgaagggcacttacatccgcagcctcgcccgc
gacattgcgcgggctctcggcaccgtaggacatgtgacgatgcttcgtcgcacaaaggcc
ggcccgttcggcctcgattccgcgatatcgctggacaaattggcggaactcggtaatggg
cgccgccttgaacagattctcctgccgctgagggcggggctggacgacatcccggctctc
cccctcgaccccgaccaggcaggagcgctccgtcaggggcgtgtgctggccgggatcgcc
agagacgacggcctccacttcgcgatgctgggcgagaccccggtggcgttggtggaggtg
gaaagcgggcaggcccgcgtcgtccgaggcttcaatctttga
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