Sphingomonas cannabina: LZK98_02605
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Entry
LZK98_02605 CDS
T08607
Symbol
thiC
Name
(GenBank) phosphomethylpyrimidine synthase ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
scab
Sphingomonas cannabina
Pathway
scab00730
Thiamine metabolism
scab01100
Metabolic pathways
scab01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
LZK98_02605 (thiC)
Enzymes [BR:
scab01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
LZK98_02605 (thiC)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
UIJ45869
LinkDB
All DBs
Position
complement(512136..513983)
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AA seq
615 aa
AA seq
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MADIPARTEIGVTTGPIRGSRKIHVGPLNVAMRAIDLEPSSGEAPLNVYDTSGPYTDPNA
RIDIMAGLPARRRDWILARGDVESYDARAVRPEDNGQLGPDRSGGVDPFPNVVRRPLRAK
SGANVSQMHYARRGIVTPEMEYVATRENLGREMLRDYVRDGESFGAAIPDYVTPEFVRDE
VARGRAIIPSNINHPETEPMAIGRNFLVKINANIGNSAVASNVAAEVDKLVWAIRWGADT
VMDLSTGRNIHDTREWIIRNSPVPIGTVPIYQALEKVGGIAEELTWEIFRDTLIEQAEQG
VDYFTIHAGVRLPYVPLTAKRVTGIVSRGGSIMAKWCLAHHKESFLYERFDEITEIMKAY
DIAYSLGDGLRPGSIADANDEAQFAELYTLGELTKRAWAQDVQVMIEGPGHVPMHKIKEN
MDKQLEACGEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWYGTAMLCYVTPKEHLGLPD
RDDVKVGVVTYKLAAHAADLAKGHPAAKLRDDALSRARFEFRWRDQFNLSLDPETAEQYH
DQTLPAEGAKTAHFCSMCGPKFCSMKITQEVRDFAAKQNAPVESFVAAEEAEAGMQAMSD
VFREKGGEIYLPEAE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggccgatatccccgctcgcaccgaaatcggcgtcacgacgggccccatccgcggctcg
cggaaaatccacgtcggccccctgaacgtcgcgatgcgtgcgatcgacctcgagccctcg
tccggcgaagccccgctcaacgtctacgacacctccggcccctataccgacccgaacgcg
cgcatcgacatcatggccggtcttcccgcccgccgccgcgactggatcctcgcccgcggc
gacgtcgagtcctacgacgcgcgcgcggtaaggcccgaggacaacggccagctcggcccc
gaccgctccggcggcgtcgatcccttccccaacgtcgtccggcggcccctgcgcgccaag
tccggcgccaacgtcagccagatgcactacgcccgccgcggcatcgtcacccccgagatg
gaatatgtcgccacccgcgagaacctcggccgcgagatgctgcgcgactacgtccgcgac
ggcgagagcttcggcgccgccatccccgactatgtcacgcccgagttcgtccgcgacgag
gtcgcccgcggccgtgcgatcatccccagcaacatcaaccaccccgagaccgagccgatg
gcgatcggccgcaacttcctggtcaagatcaacgccaacatcggcaattccgccgtcgcc
tccaacgttgcggccgaggtcgacaaactggtgtgggcgatccgctggggcgcggacacg
gtgatggacctctccaccggccgcaacatccacgacacccgcgagtggatcatccgcaac
tcgccggtgccgatcggcaccgtccccatctaccaggcgctggagaaggtcggcggcatc
gccgaggagctgacctgggagatcttccgcgacaccctcatcgagcaggccgagcagggc
gtcgactatttcaccatccacgccggcgtgcgcctgccctacgtgcccctgacggcgaag
cgcgtcaccggcatcgtcagccgcggcggctcgatcatggcgaaatggtgcctggcgcac
cacaaggagagcttcctctacgagcgcttcgacgagatcaccgagatcatgaaggcctat
gacatcgcctattcgctgggcgatggcctccgccccggctcgatcgccgacgccaacgat
gaggcccagttcgccgaactctacacgctgggcgagttgaccaagcgggcgtgggcgcag
gacgtccaggtgatgatcgagggccctggccacgtgccgatgcacaagatcaaggagaac
atggacaagcagctcgaggcctgcggtgaggcgcccttctacacattgggaccgctcacc
accgacatcgcgccgggctacgaccacatcacctcgggcatcggcgcggcgatgatcggc
tggtacggtacggcgatgctctgctacgtgacgccgaaggagcacctcggcctccccgac
cgcgacgacgtcaaggtgggcgtcgtcacctacaagctcgccgcccacgccgccgacctc
gccaagggccaccccgccgccaagctgcgcgacgatgccctgagccgcgcgcggttcgag
ttccgctggcgcgaccagttcaacctgtcgctcgatcccgagacggccgagcagtaccac
gaccagacgctgccggcggagggcgcgaagaccgcccacttctgttcgatgtgcggtccg
aagttctgctcgatgaagatcacccaggaggtgcgggacttcgcggcgaagcagaatgcg
ccggtggaaagcttcgtcgccgccgaggaggcggaggctgggatgcaggcgatgagcgac
gtgttccgggaaaagggaggcgagatctacctgcccgaagcggagtaa
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