Sphingomonas cannabina: LZK98_03100
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Entry
LZK98_03100 CDS
T08607
Symbol
groL
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
scab
Sphingomonas cannabina
Pathway
scab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZK98_03100 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scab03019
]
LZK98_03100 (groL)
03110 Chaperones and folding catalysts [BR:
scab03110
]
LZK98_03100 (groL)
03029 Mitochondrial biogenesis [BR:
scab03029
]
LZK98_03100 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scab04147
]
LZK98_03100 (groL)
Enzymes [BR:
scab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
LZK98_03100 (groL)
Messenger RNA biogenesis [BR:
scab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
LZK98_03100 (groL)
Chaperones and folding catalysts [BR:
scab03110
]
Heat shock proteins
HSP60 / Chaperonin
LZK98_03100 (groL)
Mitochondrial biogenesis [BR:
scab03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
LZK98_03100 (groL)
Exosome [BR:
scab04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LZK98_03100 (groL)
Exosomal proteins of other body fluids (saliva and urine)
LZK98_03100 (groL)
Exosomal proteins of breast cancer cells
LZK98_03100 (groL)
Exosomal proteins of colorectal cancer cells
LZK98_03100 (groL)
Exosomal proteins of bladder cancer cells
LZK98_03100 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
EAD9
Motif
Other DBs
NCBI-ProteinID:
UIJ45957
LinkDB
All DBs
Position
618928..620562
Genome browser
AA seq
544 aa
AA seq
DB search
MAAKDVKFSRDARERILRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEI
ELKDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRGI
DLAVTKVVEDLKSRSKPVAGSNEVAQVGIISANGDKEVGEKIAEAMEKVGKEGVITVEEA
KGLEFELDVVEGMQFDRGYLSPYFITNPEKMSVELADPYILIHEKKLSSLQAMLPILEAV
VQSGRPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTKGEV
VSEDLGIKLESVTLGMLGTAKRVTIDKDNTTIVDGAGEEAAIKGRIEAIRQQIEVTTSDY
DREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALL
YATKALEGLKGENDDQTRGVDIIRRSLQAPVRQIAQNAGHDGAVVAGKLIDGNDVNLGFN
AATDTYENLVQAGVIDPTKVVRTALQDAASVAGLLITTEATVAELPEDKPAAPAMPGGMG
GMDF
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcagccaaggacgtcaaattcagccgcgatgcgcgtgagcgcatcctgcgcggcgtc
gacattctcgccgacgcggtcaaggtcacgctggggccgaagggccgcaacgtcgtgatc
gacaagagcttcggcgcgccgcgcatcaccaaggacggcgtcaccgtcgccaaggagatc
gagctcaaggacaagttcgagaacatgggcgcgcagatggtgcgtgaggtggcctcgaag
accaacgacatcgccggcgacggcaccaccaccgccaccgtgctcgcccaggcgatcgtg
cgcgagggcatgaagtcggtcgcggccggcatgaacccgatggacctgaagcgcggcatc
gatctcgccgtcaccaaggtcgtcgaggacctcaagagccgctcgaagccggtcgcgggt
tccaacgaagttgcgcaggtcggcatcatctccgccaacggcgacaaggaagtcggcgag
aagatcgcggaagcgatggagaaggtcggcaaggaaggcgtgatcaccgtcgaggaggcc
aagggcctcgagttcgagctcgacgtcgtcgagggcatgcagttcgaccgcggctatctc
tcgccctacttcatcaccaatccggagaagatgtcggtcgagctcgccgatccgtacatc
ctgatccatgagaagaagctgtcgtcgctgcaggcgatgctgccgatcctcgaggcggtg
gtgcagtcgggccgtccgctgctgatcatcgccgaggacatcgagggcgaggcgctggcc
acgctcgtggtgaacaagctgcgcggcggcctcaaggtcgcggcggtcaaggcgccgggc
ttcggcgatcgccgcaaggcgatgctcgaggacatcgcgatcctgaccaagggcgaggtc
gtcagcgaggatctcggcatcaagctcgagagcgtgacgctcggcatgctcggcaccgcc
aagcgcgtcaccatcgacaaggacaacaccaccatcgtcgacggcgccggtgaagaggcg
gcgatcaagggccgcatcgaggcgatccgccagcagatcgaggtgaccaccagcgactat
gaccgcgagaagctccaggagcgtctcgccaagctcgccggcggcgtcgccgtgatcaag
gtcggcggcgcgaccgaggtcgaggtgaaggagcgcaaggaccgcgtcgacgacgcgctg
cacgcgacccgcgcggcggtcgaagagggcatcgtccccggcggcggcaccgctctcctc
tacgccaccaaggcgctcgagggcctcaagggcgagaacgacgatcagacccgcggtgtc
gacatcatccggcgctcgctgcaggcgccggtgcgtcagatcgcccagaacgccggccat
gacggcgcggtggtcgcgggcaagctgatcgacggcaacgacgtcaacctcggcttcaat
gccgcgaccgacacctatgagaacctggtccaggccggcgtgatcgacccgaccaaggtc
gtccgcaccgccctccaggacgcggcgtcggtcgccggtctcctcatcaccaccgaggcg
accgtggccgagctgcccgaggacaagcctgcggctccggcgatgccgggcggcatgggc
gggatggatttctga
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integrated database retrieval system
