Sphingomonas cannabina: LZK98_03255
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Entry
LZK98_03255 CDS
T08607
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
scab
Sphingomonas cannabina
Pathway
scab02020
Two-component system
scab02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LZK98_03255 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LZK98_03255 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scab03021
]
LZK98_03255 (rpoN)
Transcription machinery [BR:
scab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LZK98_03255 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_IclR
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
UIJ45985
LinkDB
All DBs
Position
649220..650719
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AA seq
499 aa
AA seq
DB search
MSLAPRLDLRQSQSLVMTPQLQQAIRLLALSNLEIEGFIAEEIEKNPLLEAGGSEPGEAP
EPAEPAVERTEPATADELVTDGGAATGESLDVDFAAETFHHDSPTDSIGGLDGGLGLGGT
AGGAMPEDGPDLDGFGNPETGLHDHLLAQAGASFDPGDLFVATHLIDQIDEAGYLTVPLL
DIANRLNVPLARIEAVLAVVQTFDPTGVGARNLGECLALQAKEVDRYDPCMAALIDNLDL
LARGEIARLKRICGVDDEDMADMIRELRGYDPKPGCRYGGEAVPAVVPDIFVAPRGGGWA
VEINSATLPRVLVNRSYYAELAGAHGDKASKSWLSDCLASANWLVKALDQRQRTIIKVAA
EIVKQQDGFFRHGVAHLRPLTLRQVADAIEMHESTVSRVTSNKYLSCARGLFELKYFFTS
AIQSADGGEAVSAEAVKSAIKALIAAEDPKAILSDDTLVDMLKDKGFDIARRTVAKYREA
MGIGSSVQRRRQKALEGVG
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcgcgccccgcctcgatcttcgtcagtcccagtcgctggtgatgacgccgcag
ctccagcaggcgatccgcctgctcgcgctgtcgaacctggagatcgaaggcttcatcgcc
gaggagatcgagaagaacccgctgctcgaagccggcggcagcgagcccggcgaagcgccg
gagcccgccgagccggcggtcgaacgcaccgagccggccactgccgacgaactggtgacc
gacggcggcgcggcgaccggcgagagcctcgacgtcgatttcgcggcggagacgttccat
cacgattcgccgaccgattcgatcggcgggctcgacggcgggctcggcctcggcggcaca
gcgggcggagcgatgccggaggacgggccggacctcgacggcttcggcaatcccgagacc
gggctccacgaccatctgctcgcccaggccggcgccagcttcgatcccggcgacctgttc
gtggcgacgcatctcatcgaccagatcgacgaggcgggctacctcaccgtcccgctgctc
gacatcgccaaccgcctcaacgtgccgctcgcgcggatcgaggccgtgctggcggtggtc
cagacgttcgatcccaccggagtgggtgcgcgcaacctcggcgaatgcctcgcgctccag
gcgaaggaggtcgaccgctacgatccctgcatggcggcgctgatcgacaatctcgacctg
ctcgcccgcggcgagatcgcgcgcttgaagcgcatctgcggcgtcgacgacgaggacatg
gccgacatgatccgcgagctgcgcggatacgaccccaagcccggctgccgctacggcggc
gaggcggtgccggcggtggtgcccgacatcttcgtcgcgccgcgcggcggtggctgggcg
gtcgagatcaactcggcgacgctgccgcgcgtgctcgtcaaccgcagctattatgccgag
ctcgccggcgcgcatggcgacaaggcgtcgaaaagctggctttccgactgcctcgccagc
gccaattggctggtgaaggccctcgaccagcgccagcgcacgatcatcaaggtcgcggcc
gagatcgtgaagcagcaggacggcttcttccgccacggcgtcgcgcacctccgcccgctg
acgctccgtcaggtcgccgacgcgatcgagatgcacgaatcgacggtgagccgcgtcacc
tcgaacaaatatctgtcctgcgcgcgggggctgttcgagctcaaatatttcttcacctcg
gcgatccagtccgccgacggcggcgaggcggtgtcggccgaggcggtcaagtcggcgatc
aaggcgctgatcgcggcggaggaccccaaggcgatcctctccgacgacacgttggtcgac
atgctcaaggacaagggcttcgacatcgcccgccgcaccgttgccaaataccgcgaggcg
atggggatcggcagctcggtccagcgccgccggcagaaagcgctggagggggtgggctga
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