Sphingomonas cannabina: LZK98_08050
Help
Entry
LZK98_08050 CDS
T08607
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
scab
Sphingomonas cannabina
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scab03032
]
LZK98_08050
03400 DNA repair and recombination proteins [BR:
scab03400
]
LZK98_08050
Enzymes [BR:
scab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LZK98_08050
DNA replication proteins [BR:
scab03032
]
Prokaryotic type
DNA Topoisomerases
LZK98_08050
DNA repair and recombination proteins [BR:
scab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LZK98_08050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
UIJ46882
LinkDB
All DBs
Position
complement(1672057..1673067)
Genome browser
AA seq
336 aa
AA seq
DB search
MAARLIYSDDSIPGITRRKVRHGWGYWDADGNRITDRDEIDRLNAIGLPPAYTDAWFNPK
PNGHIQAVGRDEKGRKQYRYHPDFREAQEAEKYEACALFGRKLPKLRARVQADLRRPGLS
KDKAVAAVVRLLDLGQLRVGNEGYAKANKSFGATTLRKRHGKVKGETLRLQFRAKSGKLR
QLTVTDRSLARFVKRCQDLPDQHLFAWLDDAGEAHGVTSGDVNDYIREAMGEDFTAKHFR
TWGASVIAFTALVEAEKDIGLNTMLEPVTETLGNTPAIARRSYVHPLLIELVKSGGQAAL
RAQPLPRSARYLSRYERGLIALLEKGVPTVHKRAAA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacgactgatctacagcgacgacagcatacccgggatcacacgccgcaaggtc
cgtcacggctggggctattgggatgcagacggcaaccgcatcaccgaccgcgacgagatc
gaccggctgaacgcgatcggcctgccgccggcctataccgacgcctggttcaacccgaag
cccaacggccacatccaggcggtcggccgcgacgagaagggccgcaagcaatatcgctat
catcccgactttcgggaagcgcaggaggcggagaagtacgaggcctgcgcccttttcggg
cgcaagctgcccaagctgcgcgcaagggtgcaggcggacctccgccgccccggtctcagc
aaggacaaggccgtcgcggcggtggtgcggctgctcgacctcggccagctccgcgtcggc
aacgaaggctatgccaaagcgaacaagagcttcggcgccaccacgctgcgcaagcgccac
ggcaaggtgaagggcgagacgctccgcctccagttccgcgccaagtcgggcaagctgcgc
cagctcaccgtcaccgaccgcagcctcgcccgcttcgtcaagcgctgtcaggacctgccc
gaccagcacctcttcgcctggctcgacgacgcgggcgaagcgcatggcgtgacgtcaggc
gacgtcaacgactatatccgcgaggcgatgggcgaagacttcacggccaagcatttccgc
acctggggcgcgagtgtgatcgccttcaccgcgttggtggaggcggagaaggacatcggt
ctcaacacgatgctcgagccggtcaccgagacgctcggcaacacgccggcgatcgcgcgc
aggagctatgtccacccgctgctgatcgagctcgtcaagtcgggcggccaggcggcactc
agggcccagccgctgccgcgctccgccagatatctgagccgctacgagcgcggcctcatc
gccctgctggaaaagggcgtcccgaccgtccacaagcgcgctgccgcctga
DBGET
integrated database retrieval system
