Sphingomonas cannabina: LZK98_09435
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Entry
LZK98_09435 CDS
T08607
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scab
Sphingomonas cannabina
Pathway
scab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZK98_09435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scab03019
]
LZK98_09435
03009 Ribosome biogenesis [BR:
scab03009
]
LZK98_09435
Enzymes [BR:
scab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LZK98_09435
Messenger RNA biogenesis [BR:
scab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZK98_09435
Ribosome biogenesis [BR:
scab03009
]
Prokaryotic type
rRNA helicases
LZK98_09435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
GGA_N-GAT
Nif11
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
UIJ47137
LinkDB
All DBs
Position
complement(1957511..1959202)
Genome browser
AA seq
563 aa
AA seq
DB search
MQFSNLPQPLVQALAERGYASPTPVQAAVLEEQALGRDLIVSAQTGSGKTVAFGLAMTGE
LLGADGGIIPTREPLALIIAPTRELALQVSRELSWLYGATGARIATCVGGMDAAKERRQL
GHGAHIVVGTPGRLRDHLERGALDLSALRAAVLDEADEMLDMGFREDLEEILDATPADRR
TLLFSATMPKPIVALARRYQRDALRISTVGEDRGHGDIAYQAVTVSPSDIEHAVINLLRL
HEAETAMLFCATRDNVRHLHASLVERGFAAVALSGEHSQNERNAALQALRDRRARVCVAT
DVAARGIDLPTLSLVIHVELPRDAETLQHRSGRTGRAGKKGTAVLIVPYPRRRRVEAMLR
GARINVEWINAPTPEDIRASDRERLIAALLEPVEVDDEDRALAERLLQAKSPEDIAAALV
RAHRAAMPQPEELIEATPEARRAAQQERHRPGFDDVVWFRMDIGRRQNADPRWILPLLCR
RGHITKNEVGAIRIGPNETAFQIPRAIAAKFQAAVARTAQGDDDVRIEPSTGPVQGARPQ
RNGPNRPAPRHHAKPYRKGAPRR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcagttttccaaccttccccagcctctcgtccaggcgcttgccgagcgcggctatgct
tcccctacccctgtccaggccgccgtgctggaggagcaggcgctggggcgcgacctgatc
gtctccgcacagaccgggtcgggcaagaccgtcgccttcggccttgccatgaccggagag
ctgctgggtgcggacggcggcatcatccccacgcgcgagccgctcgcgctgatcatcgcg
cccacgcgcgagctggcgctgcaggtcagccgcgagctgtcctggctctacggcgccacc
ggtgcgcgcattgcgacctgcgtcggcgggatggacgccgcgaaggagcgccgccagctc
ggccatggcgcgcatatcgtggtggggacccccggccggctgcgcgaccatctggagcgc
ggcgcgctcgacctttccgccctgcgcgccgcggtgctcgacgaagccgacgagatgctc
gacatggggtttcgcgaggacctggaggagatcctggacgcgacgcctgccgatcgccgc
accctgctgttctcggcgacgatgcccaagccgatcgtggcgctcgcgcggcgctaccaa
cgcgacgcgctgcgcatctcgaccgtcggcgaggatcgcgggcatggcgatatcgcctat
caggcggtgacggtctcgccgtcggacatcgagcatgcggtgatcaacctgctgcgcctt
catgaggcggagacggcgatgctgttctgcgccacgcgcgacaacgtgcggcacctgcac
gcgagcctggtggagcgcggcttcgccgccgttgccctgtcgggggagcacagccagaac
gagcgcaacgcggcgctgcaggcgctccgcgatcgccgcgcccgcgtatgcgtcgccacc
gatgtcgcggcacgcgggatcgacctgccgacgctgagcctcgtcatccatgtcgagctg
ccccgcgacgccgagacgctccagcatcgttcgggacgcaccggacgcgcaggcaagaag
ggcacggccgtgctgatcgtcccctatccccgccgccgccgcgtcgaggcgatgctgcgc
ggcgcacggatcaacgtcgagtggatcaacgcgccgacgcccgaggatatccgcgcgagc
gaccgcgaacggctgatcgccgcactgctcgagccggtggaggtggacgacgaggaccgc
gcgctcgccgagcggttgctgcaggcgaaaagccccgaggacatcgcggccgccctcgtc
cgcgcgcaccgcgcggcgatgcctcagcccgaggagttgatcgaagcgacgccggaagcg
aggcgcgccgcgcaacaggaacgacatcggcccggcttcgacgatgtagtatggttccgc
atggatatcggccgccggcagaacgccgatccgcgctggatcctgccgctgctgtgccgc
cgaggccacatcaccaagaacgaggtcggcgcgatccgcatcggccccaacgaaaccgca
ttccagatcccgcgcgcgatcgcggcgaaattccaggcggcggtcgctcgcaccgcccag
ggggacgacgacgtgcgcatcgagccgtcgacgggtccggtgcaaggcgcgcggccacag
cgcaacgggcccaaccggccggcaccgcgccatcatgccaagccatatcgcaagggcgcg
ccacggcggtga
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