Sphingomonas cannabina: LZK98_09535
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Entry
LZK98_09535 CDS
T08607
Name
(GenBank) TonB-dependent receptor
KO
K16092
vitamin B12 transporter
Organism
scab
Sphingomonas cannabina
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scab02000
]
LZK98_09535
Transporters [BR:
scab02000
]
Other transporters
Pores ion channels [TC:
1
]
LZK98_09535
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
OMP_b-brl_3
Motif
Other DBs
NCBI-ProteinID:
UIJ47157
LinkDB
All DBs
Position
1982236..1984080
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AA seq
614 aa
AA seq
DB search
MIRSALFLAGAAALALPAHAQDASDDGDDIVVTSARAAQPADQTGQAVTVITRDEIERRQ
TVSIADLLATTPGVQVTRSGGVGTLTSVSIRGAASEHTLVVIDGVRVNDPSAPAGAFDFA
NLLSSSVARIEVVRGPDSVPWGSQAIGGVVNVITEQPGEGLQARANAEYGYADSVFASGG
VSGRSGGLSGAFTAGYLRTDGISAAADGSERDGYRQFGATGRIGVEIAPGIGLDLRGYYA
DSRTDLDGFPPPSFTLADTPEYSKAQEIYGYAGLHADLAGGRFRNRIAFTIADVNRDNFD
PTFGSAPSFFARGRSERYEYQGDFTIIEQVRAVFGAEHEDSRFYDGTLRKSAGLTSVYGE
LIVRPIDVLTVTGGVRNDDSDTFGSHTSFSANAALALKTRTTIRASYAEGFRAPSLYERF
SSFGDPDLRPETAKSWDIGVEQALLDGRLRFGATFFDRTVRNRINFDIGCFCYGNIDRTH
VQGVEAGLTLRPVDSLTFAANYTWMEPLNRSAGFDGLDLQRRPRDQWSASADYRLPFGLS
LGATLLVAGDSFDDAANRVRLDGYAVAGIRAEMPIGDRFSIYGRVDNLFDERYQTVAGYG
TYGRAAYGGVRLKL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgatccgatccgcattgttcctggccggggccgccgcgctggcgttgcccgcccatgcc
caggacgcgtccgacgatggcgatgacatcgtcgtcacctccgcgcgcgccgcgcagccg
gccgaccagaccggccaggccgtcaccgtcatcacccgcgacgagatcgagcgccgccag
accgtctccatcgccgacctgctcgccaccacgccgggcgtgcaggtgacgcgcagcggc
ggtgtcggcacgctcaccagcgtcagcatccgcggcgccgcgagcgagcacacgctcgtc
gtgatcgacggggtgcgcgtcaacgatccctcggctcccgccggcgcgttcgacttcgcc
aacctcttgtcgagctcggtcgcgcggatcgaggtggtgcgcgggccggattcggtgccg
tggggcagccaggcgatcggcggcgtcgtcaacgtcatcacggaacagccgggcgaaggg
ctccaggcgcgcgccaatgccgaatatggctatgccgacagcgtgttcgcgagcggcggc
gtctccggccgcagcggtgggctgtcgggcgcatttaccgccggatatctccgcaccgac
ggcatctcggccgcggcggacggcagcgagcgggacggctatcgccagttcggcgcgacc
ggccggatcggcgtcgagatcgcgcccggcatcggcctcgacctgcgcggctattatgcc
gacagccgtaccgacctcgacggcttcccgccgccgagcttcacgctggccgacacgccc
gaatattcgaaggcacaggagatctacggctatgccgggctccatgccgacctcgccggc
gggcggttcaggaaccggatcgccttcaccatcgccgacgtgaaccgcgacaatttcgat
ccgaccttcggcagcgcgccgagcttcttcgcgcgggggcgcagcgagcgctacgaatat
cagggcgacttcaccatcatcgagcaggtccgcgcggtattcggcgccgagcatgaggac
agccgcttctacgacggcacgctgcgcaagtcggcggggctgaccagcgtctacggcgag
ctgatcgtccggccgatcgatgtgctgaccgtgaccggcggcgtccgcaacgacgacagc
gacacgttcggcagccacaccagcttcagcgccaacgcggcgctggcgctcaagacgcgc
accaccatccgcgcgagctatgccgagggcttccgcgcgccgtcgctctacgagcggttc
agctcgttcggcgatccggacctccggcccgagacggcgaagagctgggacatcggcgtc
gagcaggcgctgctcgacgggcggctgcgcttcggcgccaccttcttcgaccgcaccgtc
cgcaaccgcatcaacttcgacataggctgcttctgctacggcaacatcgaccgtacccat
gtgcagggcgtcgaggcggggctgacgctgcggccggtcgacagcctcaccttcgccgcc
aactacacctggatggagccgctcaaccgctcggcagggttcgacgggctcgacctccag
cgccgcccgcgcgaccagtggagcgcgagcgccgactatcgcctgccgttcggcctgtcg
ctgggcgcgacgctgctggtggcgggcgacagcttcgacgatgccgccaaccgggtacgg
ctcgacggttatgccgtcgcgggcatccgtgcggagatgccgatcggcgatcgcttctcg
atctacggccgtgtcgataacctgttcgacgaacgttatcagaccgtggcgggctacggc
acctatggccgcgcggcatatggaggcgtgcgactgaagctgtga
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