Sphingomonas cannabina: LZK98_10935
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Entry
LZK98_10935 CDS
T08607
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
scab
Sphingomonas cannabina
Pathway
scab03030
DNA replication
scab03430
Mismatch repair
scab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LZK98_10935 (dnaE)
03430 Mismatch repair
LZK98_10935 (dnaE)
03440 Homologous recombination
LZK98_10935 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scab03032
]
LZK98_10935 (dnaE)
03400 DNA repair and recombination proteins [BR:
scab03400
]
LZK98_10935 (dnaE)
Enzymes [BR:
scab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LZK98_10935 (dnaE)
DNA replication proteins [BR:
scab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LZK98_10935 (dnaE)
DNA repair and recombination proteins [BR:
scab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LZK98_10935 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
COE1_HLH
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UIJ47392
LinkDB
All DBs
Position
2323088..2326555
Genome browser
AA seq
1155 aa
AA seq
DB search
MPHSGFVPLRVLSSYTMLEGAIEPKAIAKRAKELGFPAVALTDRNGLYAAMAFSDACRDA
GVQPIIGTLLAVARPVPDGIEAPIDWLALYAQDKTGYDNLCKLVSMAHLDRPIEIDAHVS
LDALEGLTDGLIALTAGGEGALVRLLADGQLDAANAYAARLEALFPGRLYVEVVRRLDAQ
EARAEPGLLDLAYARDLPLVATNPCCFAEAEFHEAHDAMLCIANSSYVTSEDRPKSSPDA
WMKPASEMKLMFADLPEALANTLVVAQRCAVAAPKRKPILPSLAGDREGEAAMLRERSLA
GLEARLRQWSITDEETVKTYRDRLEFELDVIIQMGFAGYFLIVADFIQWAKSHDIPVGPG
RGSGAGSAVAWALTITDLDPIKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQK
YGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLDRALNGVS
ELAAEYKNHSDVRHLLDLAMKLEGLPRHSSTHAAGVVIGDRPLAELVPLYRDPRSDMPVT
QFDMKYVEGAGLVKFDFLGLKTLSVLKKAVELLKARGIVVDLDGLGWDDPGVYELLQRGD
TVGVFQLESEGMRRTLAAVRPSNFGDIIALVSLYRPGPMDNIPTFGARKNGREPIVYPHP
LLEGILAETYGIFVYQEQVMQAAQVLAGYTLGGADMLRRAMGKKIKAEMDAQRAIFVEGC
AKVNAIPEAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPHEFFAASMCFD
MAQTDKLAIFVDDMKRLGIDRRPPDVNASEAEFSVEEVGEGLAVRYGLAALKGVGERAME
LLVEERMRRGDFASLDDFARRVDPRLLNKRQVETLAAAGAFDAIDENRAGIFAVAETILA
VAAHTHESRTSGQGGLFGEADHGSASIQLPLSARWTLAERINAEKDAFGFFFSAHPLDRY
QHLAAAQGARTIVGLGEIEIAEGARTSATVGALVEDARWRTSARGRRYLMATISDATGQV
PVTCFDDDVSKALEDTARDGGCGLIGVELDRRPGEDSARVTVRSIRPFDAVAGQARMLLR
VRVDTAEALAPLADLLSVRAGRCEVMLTCDAPGGEAQLRLGRDFLVDQELVARIQSIPGV
AQAALESAELRLVAG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgccgcattcgggtttcgttccgctccgcgtcctttcgtcgtacacgatgctggaaggg
gcgatcgagcccaaggcgatcgccaagcgtgcgaaggagctgggctttcccgcggtcgcg
ctgaccgaccgcaacggcctctatgcggcgatggccttttccgacgcgtgccgcgatgcg
ggcgtgcagccgatcatcggtacgctgctggcggtggcacggccggtgccggacggcatc
gaggcgccgatcgactggctggcgctctatgcgcaggacaagaccggctacgacaatctc
tgcaagctggtgtcgatggcgcacctcgaccggccgatcgagatcgacgcgcatgtgtcg
ctcgatgcgctggaagggctgaccgacggcctgatcgcgctgaccgccggcggggaaggg
gcgctggtccggctgcttgccgacgggcagctggatgccgccaatgcctatgccgcgcga
ctggaggcgctgttcccaggccggctctacgtcgaggtcgtccggcggctcgatgcccag
gaagcccgcgccgagccgggccttctcgacctcgcctatgcgcgcgacctgccgctggtc
gcgaccaacccctgctgcttcgccgaggccgagttccacgaagcgcatgacgcgatgctg
tgcatcgccaattcgagctacgtcaccagcgaggaccgcccgaaaagctcgcccgacgcc
tggatgaaaccggcgagcgagatgaagctgatgttcgccgatctgcccgaggcgctggca
aacacgctggtggtggcgcagcgctgcgcggtggcggcgcccaagcgcaagccgatcctg
ccgagcctggccggcgaccgcgagggcgaggcggcgatgctgcgcgagcgttcgttggcg
ggcctcgaggcgcggctccggcaatggtcgatcaccgacgaggagacggtgaagacctat
cgcgaccggctcgagttcgagctcgacgtcatcatccagatggggttcgccggctatttt
ctgatcgtcgccgacttcatccaatgggcgaagtcgcacgacatcccggtgggaccgggg
cgcggttcgggtgccggctcggcggtcgcctgggcgctcaccatcaccgatctcgatccg
atcaagctggggctgctgttcgagcgcttcctcaaccccgagcgcgtgtcgatgccggac
ttcgacatcgacttctgcgaaacccggcgcggcgaggtgatccgctacgtccagcagaaa
tacggccgcgatcaggtcgcgcagatcatcaccttcggtaagctcaaggcacgcgcggtg
ctgaaggacaccggccgcgtgctgcagatgagctacggccaggtcgaccggctcgccaag
ctggtgcccaaccatccgaccgatccctggacgttggatcgcgcgctgaacggcgtgagc
gagcttgcggccgaatacaagaaccacagcgatgtccgccacctgctcgacctggcgatg
aagctggagggtctgccgcgccactcgtcgacccatgccgcgggcgtggtgatcggcgac
cgcccgctcgccgagctggtgccgctctaccgcgatccgcgctcggacatgccggtcacg
cagttcgacatgaagtacgtcgaaggcgcggggctggtgaagttcgatttcctcggcctc
aagacgctgtcggtgctcaagaaggcggtcgaacttctgaaagcgcgcgggatcgtcgtc
gatctcgacggtctcggttgggacgatccgggcgtctacgagctgctacagcgcggcgac
acggtcggcgtgttccagctggaatcggaggggatgcggcgcacgctggcggcggtgcgg
ccgtcgaacttcggcgacatcatcgcgctcgtgtcgctctatcggccggggccgatggac
aacatcccgaccttcggcgcgcgcaagaacgggcgcgagccgatcgtctatccgcacccg
ctgctcgagggcatcctcgccgagacctacggcatcttcgtctatcaggagcaggtgatg
caggccgcgcaggtgctcgccggctacacgctcggcggcgcggacatgctgcgccgcgcg
atgggcaagaagatcaaggcggagatggacgcgcagcgggcgatcttcgtcgagggctgc
gccaaggtgaatgccatccccgaggccaaggcgaacgagctgttcgacttgatcgacaag
ttcgccggctatggcttcaacaagagccacgcggcggcctatgcgctgctcgcctatcag
accgcgtggctcaaggcgcattatccgcacgagttcttcgccgcctctatgtgcttcgac
atggcgcagaccgacaagctcgcgatcttcgtcgacgacatgaagcggctggggatcgat
cgccggccgccggacgtgaatgcgagcgaggccgagttcagcgtcgaggaagtaggggag
gggcttgccgtccgctacggcctcgccgcgctcaagggcgtgggcgagcgggcgatggag
ctgctggtcgaggagcggatgcggcgcggcgatttcgcctcgctcgacgatttcgcccgg
cgcgtcgatccgcggctgctcaacaagcggcaggtcgagacgctggcggcggcgggggcg
ttcgatgcgatcgatgagaaccgggccggcatcttcgcggtggccgagaccatcctcgcc
gtcgctgcgcatacgcacgagagccggaccagcgggcaaggcggactgttcggcgaagcg
gaccatggatcggcgtcgatccagctgcccttgagtgcgcgctggacgctggccgagcgg
atcaatgccgagaaggacgcgttcggcttcttcttttccgcgcatccgctcgatcgctat
cagcatcttgccgccgcgcagggcgcgcggacgatcgtcgggctgggcgagattgagatc
gccgaaggggcgcggaccagcgccacggtcggcgctctggtcgaggatgcgcgctggcgc
acctccgcgcgggggcggcgctatctgatggcgacgatctcggacgccacgggccaggtg
ccggtgacctgcttcgacgacgatgtcagcaaggcgctggaggacaccgcgcgtgatggc
gggtgcgggttgatcggggtggagctcgaccgccggccgggtgaggacagcgcgcgggtc
accgtgcggtcgatccggccgttcgacgctgttgcgggacaggcgcggatgctcctgcgg
gtgcgcgtggataccgccgaggcgctggccccgctcgccgatctgctcagcgtgcgtgcc
ggccgctgcgaggtgatgctgacgtgcgatgcgcccggcggggaggcgcagctgcggctc
ggtcgcgacttcctcgtcgatcaggagctggtggcgcgcatccagtcgatccccggcgtc
gcgcaggctgcgctagaaagtgcggaactccgtctcgtcgccggctga
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