Sphingomonas cannabina: LZK98_11230
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Entry
LZK98_11230 CDS
T08607
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
scab
Sphingomonas cannabina
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scab03016
]
LZK98_11230 (rnd)
Enzymes [BR:
scab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LZK98_11230 (rnd)
Transfer RNA biogenesis [BR:
scab03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LZK98_11230 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
UIJ43663
LinkDB
All DBs
Position
complement(2383263..2384438)
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AA seq
391 aa
AA seq
DB search
MHIHGLITDSATLANLCTRLAQKPFITVDTEFMRENSYWPELCLIQIADTEEAAAIDPKA
PGLDLKPLLDLLVDNEDVLKVFHAGGQDLEIVYNLTGKTPHPLFDTQIAAMALGQGEQIG
YSNLVDSYLGITIDKGARFTDWSRRPLDTRQIDYAIADVTHLSRIFPKMLERLRKTGRGG
WLDEEMERLADPENYRNDPDKAWQRVRISSRKAEVLGRLKAIARWRELEAQGKNLPRGRI
AKDETIADLASNPPKKQADLAKVRGLSGSWATNDIGGRLMDAIAAAEPMSAAELPPRDER
GPALGKEGALVADLLKLLLKIRARDINVAARLLARTDDLEALAAGQRDKLPILEGWRYDQ
FGHDALDLVEGRLGFTVRNGKLKMTRTEEEA
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgcacattcacggcctgattaccgactcggctaccctcgccaatctctgcacccgcctc
gcgcaaaagccgttcatcacggtcgacaccgagttcatgcgcgagaacagctattggccc
gaactctgcctcatccagatcgccgacaccgaggaagccgccgcgatcgatcccaaggcg
cctggcctcgacctcaagcccctgctcgacctgctggtcgacaacgaggatgtgctcaag
gtcttccatgccggcggacaggacctggagatcgtctacaacctcaccggcaaaaccccg
catccgctgttcgacacccagatcgcggcgatggcgctggggcaaggcgagcagatcggc
tattcgaacctcgtcgacagctacctcggcatcaccatcgacaagggcgcgcgctttacc
gactggagccgccgcccgctcgacacgcggcagatcgactatgccatcgccgacgtgacc
catctctcgcgcatcttccccaagatgctggaacggctgaggaagaccggccgcggcggc
tggctcgacgaggagatggagcggctcgccgaccccgagaactaccgcaacgaccccgac
aaggcctggcagcgcgtccgcatctccagccgcaaggccgaggtgctggggcggctgaag
gcgatcgcgcgctggcgcgagctcgaggcacagggcaagaacctgccccgcggccgcatc
gccaaggatgagacgatcgccgacctcgcctccaacccgccgaagaagcaggccgatctc
gctaaggtgcgcgggctctcgggctcctgggcgaccaacgacatcggcggccgcctgatg
gacgccatcgccgccgccgagccgatgagcgccgccgagctgccgccgcgcgacgagcgc
gggccggcgctgggcaaggaaggcgcattggtcgccgatctcctcaagctgctgctcaag
atccgcgcccgcgacatcaacgtcgccgcccgcctgctcgcccgcaccgacgacctcgag
gcgctcgcggccggccagcgtgacaagctccccatcctcgaaggatggcgctatgaccag
ttcgggcatgacgcgctcgatctggtcgagggccggctcggcttcaccgtccgaaacggg
aagctcaagatgacgcgaacggaggaggaggcatga
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