KEGG   Sphingomonas cannabina: LZK98_12215
Entry
LZK98_12215       CDS       T08607                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K13599  two-component system, NtrC family, nitrogen regulation response regulator NtrX
Organism
scab  Sphingomonas cannabina
Pathway
scab02020  Two-component system
Brite
KEGG Orthology (KO) [BR:scab00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    LZK98_12215
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:scab02022]
    LZK98_12215
Two-component system [BR:scab02022]
 NtrC family
  NtrY-NtrX (nitrogen regulation)
   LZK98_12215
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 Mg_chelatase AAA_5 B12-binding FleQ OKR_DC_1_N AAA_16
Other DBs
NCBI-ProteinID: UIJ43856
LinkDB
Position
2546300..2547679
AA seq 459 aa
MTLDILVVDDELDIRELVSGVLEDEGYETRTAADSDAALEAIAARRPSLVLLDVWLQGSR
LDGLELLDEIKRRDPSIPVLVISGHGNLDTAVAAIRRGASDFIEKPFEAERLLLLVERAT
ETERLKREVASLRATVGRETDLTGSSTAINSVRATLKRVASTGSRVLIMGGAGVGKEVAA
RLLHGWSTRANGPFVVVSAARMTPERVEEELFGVEEGGDLVRPGLLEQAHGGTLFLDEIA
DMPVATQARILRVLTDQSFTRVSGTRIVKVDVRVVSATSRDLTAEIAEGRFREDLYYRLN
VVPVAIPTLAERREDIPALVEHFVAHYAAERRVPTPEIAADAMVALQSYEWPGNVRQLRN
VVERTVILAPGNRIGRIDLDLLPPEVLGNTPGGDGGVTATAIMGAPLREARESFEREYLR
VQIRRFSGNISRTASFIGMERSALHRKLKLLGITETREE
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgaccctcgacattctcgtcgtcgacgacgaactcgacatccgcgaactcgtttcgggc
gtcctcgaggacgaaggttacgaaacacggactgccgccgacagcgatgccgcacttgag
gccatcgctgcgcggcggccgagcctggtgctgctcgacgtctggctgcagggctcgcgg
ctcgacgggctcgagctgctcgacgagatcaagcggcgcgacccgtcgatcccggtgctg
gtgatctccggccacggcaacctcgacaccgccgtggcggcgatccggcgcggcgccagc
gacttcatcgagaagccgttcgaagcggagcggctgctgctgctcgtcgagcgcgcgacc
gagaccgagcggctgaagcgcgaggtggcgagcctgcgcgcgacggtgggccgtgagacc
gaccttaccggcagctcgaccgcgatcaactcggtccgcgcgacgctgaagcgtgtcgcc
tcgaccggcagccgtgtgctgatcatgggcggcgccggcgtcggcaaggaggtggcggca
cggctgctccacggctggagcacgcgtgccaacggccccttcgtggtggtgagcgcggcg
cggatgacgcccgagcgtgtcgaggaggagctgttcggcgtcgaggagggcggcgatctc
gtgcggcccggcctgctcgagcaggcgcatggcggcacgctgttcctcgacgagatcgcc
gacatgccggtcgcgacccaggcgcggatcctgcgcgtgctgaccgaccagagcttcacc
cgcgtcagcggcacccgcatcgtcaaggtcgacgtgcgcgtggtctccgccacctcgcgc
gacctgactgccgagattgccgaggggcggttccgcgaggacctctactatcgtctcaac
gtggtgccggtggcgatcccgacacttgccgaacggcgtgaggacattccggcgctggtc
gagcatttcgtcgcccattacgccgccgagcgccgcgtgccgacgcccgagatcgcggcc
gacgcgatggtggcgctgcagagctacgaatggccgggcaacgtccgccagctccgtaac
gtcgtcgagcggacggtgatcctggcgccgggcaaccgcatcggccgcatcgacttggac
ctgctgccgcccgaggtgctgggcaatacgcccggcggggatgggggcgtgaccgccacc
gcgatcatgggggcgcccctgcgcgaggcgcgtgaaagcttcgaacgcgaatatctgcgc
gtccagatccggcgcttctcgggcaatatctcgcggacggcgagcttcatcgggatggag
cggtcggcgttgcatcgcaagctcaagctgcttggaatcaccgagacgcgcgaggagtag

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