Sphingomonas cannabina: LZK98_13080
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Entry
LZK98_13080 CDS
T08607
Name
(GenBank) heparinase II/III family protein
KO
K20525
oligo-alginate lyase [EC:
4.2.2.26
]
Organism
scab
Sphingomonas cannabina
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
LZK98_13080
Enzymes [BR:
scab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.26 oligo-alginate lyase
LZK98_13080
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Hepar_II_III_C
Alginate_lyase
Alg17C_C
Motif
Other DBs
NCBI-ProteinID:
UIJ44012
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Position
2728123..2730321
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AA seq
732 aa
AA seq
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MRMMRPAIMLALLATAVPATAMSTATGQTNTAAAPVLLDAQGMAAMAGEGARYPLFAAEL
RRVRTEVDAAMRRPIDVPVPKDPGGGFTHEQHKRNYTLIYGAGLLYRITGERAYADYART
MLLAYARLYPTLGKHPAASNEEYGKLFWQSLNDSVWVVYAVQGYDAIRDTLTPADRKAID
DQVFRPMAKFLSEEQVRVFDLIHNHATWSCAAVGMIGYVLRDHALVDKALKGSDLSGKAG
FLRQVDLLFSPDGYYTEGPYYQRYALLPFVLFARVISENDPSLKIFQYRDGVLVKAITTA
IQLTQDGYFFPINDAMPDKSLKTDELYQAVAIGYGVTHDPALLSIAEWQGRTVLSPDGLA
VARDVAAGKAKPFAFASALFRDGPDGGQGGLAVMRDKDQTLLAKNSAMGMGHGHFDKLNW
LLYDNGHPIVVDYGAARFLNVESKDGGRYLKENESWAKQSVAHNTLVVNETSQFAGKWKV
GQTLAPRQVFFSGDGPTKVSTGEIAGAWPGVTFRRTLVQLPVAGMASPLVVDLMSVKGGG
QATYDLPLHYNGHITDVGFPIRSNVAERPVLGKQAGYQHIWVDATGTLPAGGGALTWMTD
DRFYTYRMLPPAGAQVILGESGANDPNFNLRREPLLIERVTGKDVQFVNLLEPHGVYDPS
AETTVGSSSRIAALRHARGDDGDLIAIDLAGGGTITLAIADSADPAAMHRATIDGRTVEW
KGHFARFDGTAK
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatgatgaggccggcgatcatgttggcgctgctcgcgacggcagtgccggcgacg
gcgatgtccacagccacgggccaaaccaatacggctgccgctccggtgctgctcgacgcg
cagggcatggcggcgatggctggagaaggcgcccgctacccgctgttcgccgccgagctg
cgccgcgtccgcaccgaggtcgatgccgcgatgcgccggccgatcgacgtgccggtgccg
aaggaccccggcggcggcttcacccacgagcagcacaagcgcaactacacgctgatctac
ggcgccgggctgctctaccgcatcaccggcgagcgcgcctatgccgactatgcccgcacc
atgctgctcgcctatgccaggctctatcccacgctcggcaagcaccccgccgcctcgaac
gaggaatatggcaagctgttctggcagagcctcaacgacagcgtgtgggtggtttatgcc
gtgcagggctatgacgcgatccgcgacacgctgacgccggccgaccgcaaggcgatcgac
gaccaggtcttccgcccgatggcgaagttcctgtcggaggagcaggtccgcgtcttcgac
ctgatccacaaccacgcgacctggtcgtgcgcggcggtcggcatgatcggctatgtgctg
cgcgaccacgcgctggtcgacaaggcgctgaagggcagcgacctcagcggcaaggccggc
ttcctgcgccaggtcgatctcctgttctcgcccgacggctattacaccgaaggcccctat
taccagcgctacgccctgctcccgttcgtgctgttcgcgcgggtgatctcggagaatgac
ccaagcctcaaaatcttccagtaccgcgacggcgtgctggtcaaggcgatcaccaccgcg
atccagctgacgcaggacggctatttcttcccgatcaacgatgcgatgcccgacaagagc
ctcaaaaccgacgagctctatcaggcggtcgcgatcggctacggcgtgacgcacgatccg
gcgctgctctcgatcgccgagtggcaggggcggaccgtgctcagccccgacggcctcgcg
gtggcgcgcgatgtcgccgcgggcaaggccaagcccttcgccttcgcctccgcgctgttc
cgcgacgggccggacggcggtcagggagggctcgccgtgatgcgcgacaaggaccagacg
ctgctcgccaagaacagcgcgatgggcatgggccacggccatttcgacaagctcaactgg
ctcctctacgacaacggccatccgatcgtcgtcgactatggcgccgcgcgcttcctcaac
gtcgagagcaaggacggcggccgctacctcaaggagaacgagagctgggcgaagcagagc
gtcgcccacaacacgctggtggtgaacgagaccagccagttcgccggcaagtggaaggtc
ggccagacgctggcgcccaggcaggtcttcttctcgggcgacggcccgaccaaggtcagc
accggggagatcgccggtgcctggccgggcgtcaccttccgccgcacgctggtgcagctt
cccgtcgccggcatggcgagcccgctcgtcgtcgacctgatgagcgtgaagggcggcggc
caggccacctacgacctgccgctccactacaacgggcacatcaccgacgtcggcttcccg
atccggtccaacgtcgcggagcggccggtgctcggcaagcaggccggctatcagcacatc
tgggtcgatgcgaccggcacgctgcccgcgggcggcggagcgctcacctggatgacggac
gaccgcttctacacctatcgcatgttgccgcccgccggcgcgcaggtgatcctgggcgag
agcggcgccaacgatcccaacttcaacctgcgccgcgagccgctgctgatcgagcgggtg
acgggcaaggacgtgcagttcgtcaacctgctcgagccgcacggcgtctacgatccctcg
gccgagaccacggtcggcagcagcagccggatcgcggcgctccgccatgcccggggggac
gacggcgacctgatcgcgatcgacctggccggcggcggcacgatcacgttagccatcgcc
gactccgccgatcccgcggcgatgcaccgcgcgacgatcgacggccgcacggtcgagtgg
aagggacacttcgcccgcttcgacggaaccgccaaatga
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