Sphingomonas cannabina: LZK98_13830
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Entry
LZK98_13830 CDS
T08607
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
scab
Sphingomonas cannabina
Pathway
scab00550
Peptidoglycan biosynthesis
scab01100
Metabolic pathways
scab01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
LZK98_13830 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
LZK98_13830 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
scab01011
]
LZK98_13830 (mrdA)
Enzymes [BR:
scab01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
LZK98_13830 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
scab01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
LZK98_13830 (mrdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
UIJ44152
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All DBs
Position
2876480..2878531
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AA seq
683 aa
AA seq
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MSGPTRIVTEASQAFTFSRRAMVISGLQIGMGVLLAGRMTWLAVAENEHYSLLSESNRVN
LTPIPPRRGWIVDRRGVAIANNRTDFRVDIIPDRLQDKDRVIGELTTLLGLKPEDVARIQ
AELKRAAGFQPVQVAENLDWERFAAVSVRIPELPGVAPTRGFSRSYPLGAAVGHLVGYVG
AATAEQYKATKDPLLMTPGFKVGKDGLEKTLDAQLRGKPGAKRVEVTARGKLVRELATRG
DTPGQTIRLTIDAGLQEYAARRLGTNSGSAVVFDCQTGEILAMVSMPAYDPNSFSDGISH
SEWKMLSEDDHIPLMNKVTQGLYPPGSTVKPMNGLALLAAGVDPNERVFCSGALRVGTGV
FHCHKRRGHGPLDLKHAIMQSCDIYFYEMVRRLGYDRVAPVARMVGLGEKFDLPFASQRY
GTVPDSAWKLKKYKQPWAVSDSLNASIGQGYVLANPLQLAVMSARIASGKHLHPHLLAGK
DSRDAPALGVSPEHLAIVRDAMSGVINGGGTGGAARMQIPGILMGGKTGTAQVRRITMAE
RRSGVLNNAALPFKLRDHALLVCFAPVDNPRYAAAIVLEHNAHLIRNLDTPMTGRDILTY
LFDRDRALKTLAEIEPTWGGDIKTRMEAQARAFEAAQNAPPTALPPEDAAAAASNVADAA
ANAAAAAAPTTGVAETRGGGDPE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcccgacacgcatcgtcaccgaagccagccaggccttcaccttctcgcgccgg
gcgatggtgatctcgggtctgcagatcggcatgggcgtgctgctggccgggcgcatgacc
tggctcgccgtcgccgagaacgaacattactcgctgctgtcggagagcaaccgcgtcaac
ctgacgccgatccccccgcgccgcggctggatcgtcgaccgcaggggcgtggcgatcgcc
aacaatcgcaccgatttccgcgtcgacatcattcccgaccggcttcaggacaaggaccgg
gtgatcggcgagctgaccacgctgctcggtctcaagcccgaggacgtcgcccgcatccag
gccgagctcaagcgcgccgccggcttccagcccgtgcaggtcgccgagaacctcgactgg
gagcgcttcgcggcggtcagcgtgcgcattcccgagctgccgggcgtagcgccgacgcgc
ggcttctcgcgcagctatccgctgggcgcggcggtcggccatctcgtcggctatgtcggc
gcggcgaccgccgagcagtacaaggcgaccaaggacccgctgctgatgacgcccggcttc
aaggtcggcaaggacgggctcgaaaagacgctggacgcccaactgcgcggcaagcccggc
gccaagcgcgtcgaggtcaccgcgcgcggcaagctggtccgcgaactcgcgacccgcggc
gacacgcccggccagaccatccgcctcaccatcgacgccggcctgcaggaatatgccgcg
cggcgcctcggcaccaattcgggctcggcggtggtgttcgactgccagaccggcgagatc
ctggcgatggtgtcgatgccggcctacgaccccaacagcttctccgacgggatcagccac
agcgagtggaagatgctgtcggaggacgaccatatccccctgatgaacaaggtcacgcag
gggctctatccgccggggtcgaccgtcaagccgatgaacggcctcgcgctgctcgccgcc
ggcgtcgatcccaacgagcgggtattttgctcgggcgcgctcagggtcggcaccggcgtg
ttccattgccacaagcgccgcggccacggtccgctcgacctcaaacatgcgatcatgcag
agctgcgacatctatttctacgagatggtgcggcggctgggctacgaccgcgtcgctccg
gtcgcgcgaatggtcgggctgggcgagaagttcgacctgcccttcgccagccagcgctac
ggcaccgtccccgacagcgcgtggaagctcaagaaatacaagcagccctgggcggtctcg
gattcgctcaacgcctcgatcggccagggctatgtgctcgccaatccgcttcagctcgcg
gtgatgtccgcccggatcgcctccggcaagcatctccatccgcatctgctggcgggcaag
gacagccgcgacgcccctgccctcggcgtctcgcccgagcatctcgcgatcgtccgcgac
gccatgtcgggcgtgatcaacggcggcggcaccggcggcgcggcgcggatgcagattccc
ggcatcctgatgggcggcaagaccggcaccgcgcaggtgcgccgcatcaccatggcggag
cggcgttcgggcgtgctcaacaatgccgccctgcccttcaagctgcgcgaccatgcgctg
ctcgtctgcttcgcgccggtcgacaatccccgctatgctgcggcgatcgtgctcgagcac
aacgcccacctcatccgcaacctcgacacgccgatgaccgggcgcgacatcctgacctat
ctgttcgatcgcgaccgcgcgctgaagaccctcgccgagatcgagccgacctggggcggc
gacatcaagacgcgcatggaggcgcaggcgcgcgcgttcgaggcggcgcagaacgccccg
ccgaccgcgctcccgcccgaggatgccgccgcggccgccagcaacgtcgccgatgccgcc
gccaacgccgccgcggccgctgcgccgaccacaggcgttgccgagacgcgcggcggcgga
gacccggaatga
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