Sphingomonas cannabina: LZK98_14450
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Entry
LZK98_14450 CDS
T08607
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
scab
Sphingomonas cannabina
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scab03400
]
LZK98_14450 (addB)
Enzymes [BR:
scab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LZK98_14450 (addB)
DNA repair and recombination proteins [BR:
scab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LZK98_14450 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
DUF2800
HTH_62
Motif
Other DBs
NCBI-ProteinID:
UIJ44265
LinkDB
All DBs
Position
complement(3028606..3031539)
Genome browser
AA seq
977 aa
AA seq
DB search
MAEAAARRLNLYTIPPHRAFADALAAGLIRRFGGEPTGLARGIVLVPTNRSKRAITDAFV
RASGSGLLLPRLVAIGDPEIDEAVGPLFDPADAEEPVPPAVAPMARRMILARLVQEADPA
IDSAEAVRLAGDLARTLDQLLVEEVAPGRLREISLFEPLSAHWERALTTFAVVLDRWPGE
LARLGRIDLADRRGRLLDRVAKVWRERPPAGFVCAAGVTSAAPAIARVLRSVAGLAQGMV
VLPGLDLAMDEEGWEALGPFPPDPVTGRRRQAEETHPQYHLKLLLERMGVRRGEFRTWQA
TSEVDAPPARSRAIATALAPAELTHRWIALKPGERNLGGVSALEVATPAEEAQAIALRLR
EALEMPGRTAALVTPDRALARRVAAHCARWNIAVDDSAGQPLSQTPPGTLLLAIAEAGAQ
RFAPVPLLALLKHPLVRSEERAAWLEGARAVDRALRGPRPAAGLDGLDRHLGEAGGLAAS
WWAEVRPLLDGIETAFGGGVQPLPGLLGCLREAATALAGDAAWARAEGRAAAELLAELEE
RAALGPPLVEPATLAALLRTLMDEVAVRPPQGGHPRLAIYGLLEARLQAADVMILGGLNE
GVWPGRPAPDPWLAPRIRSELGLPGLEARIGLTAHDFAMGLGAPEVLLTRARRDAKSPTI
ASRFWLRLQALAGEGWVAADALARWARSLDDPGMFAPSPRPEPAPPAAIRPKRISVTEVD
RLKADPFAFYARRMLRLMPLEPVDADATAAWRGTEVHAVLRVWAEEDDCAPEKLRPRAEA
MLAGAHPLMRALWAPRLYEAVDWIASRIAAMAEEGRQVIAVERQGAIDIAGVELRGTFDR
LDRMADGTLGIVDYKTGKAPSVAAVKAGFSLQLGLLGLIAEERGFEGIAGRAGCFEYWSL
AKDRGAFGKISSPVDPTGARDKIRTDEFVEIARGHFVEAAGRWLTGEEPFTAKLRPEFAP
FADYDQLMRRDEWYGRE
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggcggctgcccggcgcctcaacctctacaccatcccgccgcatcgtgccttc
gccgatgccttggcggccgggctgatccggcgcttcggcggcgagccgaccgggctcgcg
cgcggcatcgtgctggtgccgaccaaccggtcgaagcgggcgatcaccgatgccttcgtg
cgcgcgagcgggagcggcctcctgttgccgcggttggtcgcgatcggcgatcccgaaatc
gacgaggcggtggggccattgttcgatcctgccgatgccgaggagccggtgccgcccgcg
gtggcgccgatggcgcggcggatgatcctggcgcggctggtgcaggaggccgatccggcg
atcgacagcgccgaggcggtgcggctggcgggcgaccttgcgcgcacgctcgaccagctg
ctggtggaagaggtggcgcccgggcggttgcgcgagatcagcctgttcgaaccgctcagc
gcgcattgggagcgagcgctgacgacctttgcggtggtgctcgaccgctggccgggggag
ctggcccggctggggcggatcgacctcgccgatcggcgggggcggctgctcgatcgggtg
gcgaaggtgtggcgggagcggccgccggcggggttcgtgtgcgcggcgggcgtgacctcg
gccgcgccggcgatcgcgcgcgtgctgcgcagcgtcgcgggactggcgcagggtatggtg
gtgctgccggggctcgacctggcgatggacgaggagggctgggaggcgctggggccgttc
ccgcccgatccggtcaccggccggcggcgccaagcggaggagacgcacccgcaatatcac
ctcaagctgctgctcgagcggatgggcgtgcggcggggcgagttccgcacctggcaggcg
acgagcgaagtcgacgcgccgcccgcgcgcagccgcgcgatcgcaaccgcgctggcgccg
gcggagctgacgcaccgctggatcgccttgaagccgggggagcgcaacctgggcggggtc
agcgcgctggaagtggcgacgccggccgaggaggcgcaggcgatcgcgctcaggctgcgc
gaggcgctggagatgcccggacggacggcggcgctggtgacgcccgaccgcgcattggcg
cggcgggtggcggcgcattgcgcgcggtggaacatcgcggtcgacgattccgccggtcag
cccctgtcgcagacgccgccgggaacgctgctgctcgcgatcgccgaggcgggggcgcag
cgtttcgccccggtgccgctgctggcgctgctcaagcatccgctggtcaggagcgaagag
cgcgcggcctggctggaaggggcgcgggcggtcgatcgagcgctgcgcggaccgcggccg
gcggcggggctggatgggctcgaccggcatctcggcgaggcgggcgggctggcggcgagc
tggtgggccgaggtgcggccgttgctcgacgggatcgagacggcattcggcggcggggtg
cagccgctgccggggctgctcgggtgcctgcgcgaggcggcgacggcgctggccggcgat
gccgcttgggcacgcgccgagggccgggcggcggcggagctgctcgcggagctggaggag
cgtgcggcgctcggaccgccgctggtcgagccggcgacgctcgccgcattgctgcgcacg
ctgatggacgaggtggcggtacggccgccgcagggcgggcatccgcggctggcgatctat
ggcctactcgaggcgcggttgcaggcggcggacgtgatgatcctgggcggcctcaacgaa
ggggtgtggccggggcggccggcgcccgatccgtggctggcgccgcgcatccgctcggag
ctggggctgccggggctggaagcgcggatcggcctcaccgcgcacgacttcgcgatgggg
ctgggcgcgccggaggtgttgctgacacgcgcgcggcgcgatgccaagtcgccgacgatc
gcctcgcgcttctggctgcggctccaggcgctggcgggcgagggatgggtggcagcggac
gcgctggcccgctgggcgcgttcgctcgacgatccgggcatgttcgcgccgagcccgcgt
ccggaaccggcgccgccggcggcgatccggccgaagcggatctcggtgaccgaggtcgac
cggctgaaggccgatcccttcgccttctacgcacggcggatgctgcggctgatgccgctg
gagccggtcgatgccgacgccaccgccgcctggcgcgggaccgaggtccatgcggtgctg
cgcgtctgggccgaggaggacgattgcgcgcccgagaagctgcgtccgcgggccgaagcg
atgctggcgggggcgcatccgctgatgcgggcgctgtgggcgccgcggctctacgaggcg
gtggactggatcgcgagccggatcgcggcgatggccgaggaggggcggcaagtgatcgcg
gtcgagcgccagggggcgatcgatatcgccggagtcgagctgcgcggcaccttcgaccgg
ctcgaccggatggcggacgggacgctcggcatcgtcgactacaagaccggcaaggcgccc
tccgtcgcggcggtgaaggcggggttcagcctgcagctggggctgctcgggctgatcgcg
gaagagcgcgggttcgaggggatcgcagggcgcgccggctgtttcgaatattggtcgctg
gcgaaggatcggggggcattcggcaagatcagctcgccggtcgatccgacgggcgcgcgg
gacaagatccggaccgacgagttcgtcgagatcgcgcgcgggcatttcgtcgaggcggcg
gggcggtggctgaccggggaggagccgttcacggcgaagctgcggccggagttcgcacct
ttcgccgactacgaccagctcatgcggcgggacgagtggtatgggcgggagtga
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