Sphingomonas cannabina: LZK98_17125
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Entry
LZK98_17125 CDS
T08607
Name
(GenBank) restriction endonuclease
Organism
scab
Sphingomonas cannabina
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mrr_cat
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UIJ44758
LinkDB
All DBs
Position
3628128..3632696
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AA seq
1522 aa
AA seq
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MPRKTITITSPTPPVTAREALHEILRTWEPAAGAPGFEGLVADALAGFTGYTFRLAKSGS
QFGRDAATTAGRFAIAMEAKRYTNSVPLQELVGKSTLAAFALAEGVDLWVLVATVEVSET
TERQLEQILDKGGLSLLTLDWTAAGLPPLAVLLAAVPERVKAFAKLHLDPSKHAALATGL
ADIAADPGFDASLAEIRSKLSPGLLGLDAFRHSNADWANSTLGSRRLAQRQFSQFLVPLE
DRALTADRPTLRRSIGEAVDTARADAEGDTLVLVAGGEGSGKTWAVTNWWLSADPRPILL
LSIGRIAEQLSPGTEPVEILARLAAHQSGSRDDTAVARWRRRIERWSQGGRSRDAFVLVV
DGLNETSGKAWASILRDLLPAVRDLGGVLVATCREQYWNREVGGRLPRYVTTIRVQVNDY
DDAEFADVLRRNGVDPDDLNPRLNAFMRNPRICALALTILPRLAGVQDLSVERLLMEFWR
HRLEERDDLIAHNETDFRDLLVRHAREYRERQGADFNRDEWRTRSGAATRDDGRDIRNDL
TEIEEGRFFDGASNTYQFRPESLRFALGLLIAEELKAHVDAGDDLDQALAPIIDPIRGFD
AAADILTAAVAVSVMDAGYPDAGIAALVAVWISLQNHVEDAFDELMPYIAARPGPFLDAY
ESRDTDRDDGRFLRFILEAAAERESVRNALDQRVARWLGSWTRALPESADGPERERRQTE
RNEQIDARLVSLTPDERAWFAANCPELARPSGLAMAATLHLAGRAQTPFAPGLVAFAFAY
KVGGTYNSPYDELAWVLRLNRIDPAEFAAAVRNDVARFVAPGSSTLAGQAVAFALRLMGT
EADEDMAEELAPRPSPNAMGGPEPDPLDPASEPPAGIAEAAGRIAAIDPAAMWNHMSTTA
EDHDLERTMESLVRFEFETLREFLDRIARTISTRTGLPLRQLAWHLPWLSPILDAETIEA
IDQRIADIAANPSLAPSDDADWITGTMVESVLPTRDGAAQLDVLQSLPNDAPYYFRYSRV
AKPLTGAEAADRLAAVIDGDPDILERTLIFLSDGAVEVTPAMRDLVIRCLGSDEAEVVAA
AAEFARTHDDPDIDDAVLALPRPDDVDRTWRARTVSAAISAAIARRGREDLVEDIPVEHL
DWVASRMPAALDRLADTIEATVEMLTVHVDVEAPADAILTLEVEQPETAARISMEDRGEQ
FDNPIEGLKEAMSDTSGARFASRRRLLGQQLEQFLDSLANAGALVVARRPFAIGLDVLAR
SQPDRYAGWLRSILSTTDERALRNLQNVGLALAQHYAEIDADLSARTFAHLWRIDPHVTV
TMGPAKHPIRFTSLFSAVSSEEIDTLRGRVLEQASDDGQLATVVLAAEAAGAGQWLDGYI
DGRLASATPADQALGITAASMRPANPHSDAVLGRDWKRGFLGDAARAGRTSYARSRHSDH
WFAQAAAANHPHERWRYLELAIAAADRRQLVDAARRVTPDLRLMGGEVGERLAKAADKAN
TEGKKTLFGWKKPTGLLGQILR
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgccccggaagacgatcacgatcacatccccgacacctcccgtcaccgcacgcgaagcc
ctgcacgagatactgcgcacgtgggaaccggcggccggcgcgcccggcttcgagggccta
gtcgcggacgcgcttgccggctttacgggatacacgtttaggctcgccaagtcggggtct
cagttcggccgcgacgccgcgaccaccgcgggccggttcgcgatcgccatggaggcgaag
cgctacacgaactcggtcccgctgcaggagctcgtcggcaagtcgacgctcgctgccttc
gcgcttgccgagggcgtcgacctgtgggtgctcgtggccaccgtagaggtcagcgagacg
accgaacggcagctcgagcagatcctcgacaagggcggcctcagccttctcaccctcgat
tggacggcggccgggctgccgccgctcgccgtcctgctcgcggcggtaccggaacgggtg
aaggcgttcgcgaagctgcatctcgatccctccaagcacgcggcgctcgccaccggcctc
gccgacatcgccgccgatcccgggttcgatgccagcctcgccgagatccgcagtaagctg
tcacccggcctgctcgggctggatgccttccgccacagcaacgccgactgggcgaactcc
accctcggaagccggcggctcgctcagcgccagttctcccagttcctggtgccgcttgag
gaccgggcgctcaccgccgaccggccgacgctgcggcgctcgatcggcgaggcggtcgac
accgcgcgcgccgacgcggagggcgacacgctcgtgctggtcgcgggcggcgagggctcc
ggcaagacctgggcggtcacgaactggtggctttccgcggacccacgcccgatcctgctg
ctgtccatcgggcggatcgcggagcagctctcgcccggcaccgagccggtcgagatactc
gcacggcttgcggcgcaccagtcgggatcgcgcgacgacaccgcagtcgcacgctggcgc
cggcggatcgagcggtggtcacagggtggccgatctcgcgacgcgttcgtgctggtggtc
gacggcctcaacgagacgagcggcaaggcgtgggcgtcgatactgcgcgacctgctgccc
gccgtccgcgacctgggcggcgtcctcgtcgccacctgccgcgagcaatactggaaccgc
gaggttggcggccgcctgccacggtacgtcacgaccattcgcgtccaggtgaacgattac
gacgacgccgagttcgccgacgtgctgcgccggaacggcgtcgatccggacgatctgaac
ccgcgcctcaacgcgttcatgcgcaatccgaggatctgcgcgctggcgctgacgatcctg
ccccgcctcgccggcgtgcaggacctcagcgtcgagcgcctgctcatggagttctggcgg
caccggctcgaggagcgcgacgacttgatcgcgcacaacgagaccgacttccgcgacctc
ctcgtccgccacgcgcgcgaataccgcgaacgccagggcgccgacttcaaccgggacgag
tggcgcacccgctcgggcgcggcgacccgcgacgacggccgcgacatcaggaacgacctc
accgagatcgaggaagggcgcttcttcgacggcgccagcaacacctaccagttccggccg
gagagtctgcggttcgctctcggtctcctgatcgccgaggagctgaaggcgcacgtcgac
gcgggggacgacctagaccaagcgctcgcgccgatcatcgacccgatcaggggcttcgac
gcggccgccgacatcctgaccgcggccgtcgcggtgagcgtgatggacgccggctacccc
gacgcggggatcgccgcgctcgtcgcggtctggatatcgttgcagaaccacgtcgaggac
gcgttcgacgagttgatgccgtacatcgccgccaggcccggcccgttcctcgacgcctac
gaatcgcgggacactgaccgcgacgacggacgcttcctccgcttcatcctggaggcggcc
gccgaacgggagagcgtgcggaacgcgctggaccagcgcgtcgcccgctggctcggcagc
tggacccgggcgctgcccgagagcgccgacgggccggagcgcgaacgccgccagaccgaa
aggaacgagcagatcgacgcccgtctcgtgtcgctgacgcccgacgagcgggcctggttc
gccgcgaactgccccgaactcgcgaggccgagcggtctggcgatggcggcgacgctgcac
ctcgccggcagggcgcagacgccgttcgcgcccgggctggtcgcgttcgcgttcgcctac
aaggttggcggcacatacaattcgccctacgacgaactcgcctgggtgctccggctgaac
cggatcgatccggcggaattcgcggccgcggtgcggaacgacgtcgcacgcttcgtcgct
cccggttcctcgacgctcgccggccaggccgtcgcgttcgccctgcgactgatggggacc
gaggccgacgaggacatggccgaggagctcgcgccgaggccctcgccgaatgccatgggc
gggcccgaaccggacccgctcgaccccgcctcggaaccgcccgccgggatcgcggaggca
gccgggcgcatagcggcgatcgaccccgccgcgatgtggaaccacatgagcaccacggcc
gaggaccacgacctcgagcggaccatggagagcctcgtccgcttcgagttcgagaccctg
cgggaatttttggaccggatcgcgcggaccatctcaacccggacggggctcccgctccgg
caactcgcatggcacctgccctggctcagccccatcctcgacgccgagaccatcgaggcg
atcgaccagcggatcgccgacatcgcggccaacccgtcgctggcgccgtcggacgacgcc
gactggatcacgggcacgatggtcgagagcgtcctgcccacccgtgacggcgccgcgcag
ctcgacgtcctccagtcactgcctaacgacgcgccctactatttccgatactcgcgggtg
gccaagccgctgacgggcgccgaggccgcggaccggttggccgcggtcatcgacggcgat
cccgacatcctcgaacggacgctgatcttcctctccgacggggccgtcgaggtcacgccg
gcaatgcgggatctcgtcatccgctgcctgggcagcgacgaggccgaggtggtcgcggcg
gcggccgagttcgccaggacgcacgacgatcccgacatcgacgacgcggtgctcgcgctc
ccgcgtcccgacgacgtcgaccgcacgtggcgggcgaggaccgtctccgcggcgatctcg
gccgccatcgcgcgacgcggccgcgaggatctcgtcgaggacattcccgtggagcatctg
gactgggtcgcgtcccgcatgcccgcggcactcgaccgcctggcggacacgatcgaggct
acggtcgaaatgctcacggtccatgtcgacgtcgaggcaccagcggacgcgatcttgacg
ctcgaggtcgagcagccggagaccgccgcccgcatcagcatggaagaccggggcgagcag
ttcgacaatccgatcgagggcctgaaggaggcgatgtccgatacgtcgggcgcccgtttc
gccagcaggcgccggctcctcggccagcagctcgagcagttcctcgacagcctcgcgaac
gccggcgcgctcgtcgtcgcccgccggccgttcgcgatcggcttggacgtgctcgcgcgg
tcgcaaccggacagatatgccgggtggctgcgcagcatcctttcgaccaccgacgagcgc
gcacttcgcaacctccagaacgtcggcctcgccctcgcgcagcactacgccgagatcgac
gccgacctctcggccaggaccttcgcccatctatggcgcatcgacccgcacgtgacggtg
acgatgggtccggccaagcatccgatacgcttcacgtcgctgttcagcgcggtgtcgtcg
gaagagatcgacacgttgcgaggcagggtgctggagcaggcgtccgacgatggccaacta
gcgaccgtggtgctcgccgcggaggcggcgggcgcaggccagtggctggacggctacatc
gacggacggctcgcctccgccacgccggccgaccaggcgctggggataactgcggcgtcg
atgcgccccgccaacccgcattccgacgccgtgctcggacgcgactggaagcgcggcttc
ctcggcgatgcggccagggcgggacggaccagctacgcgaggtcgcgccattccgaccac
tggttcgcccaggccgcggccgcgaaccatccgcatgagcgctggcgctacctggaactc
gcaatcgcggcggccgatcggcggcagctggtggatgccgcacggcgcgtcaccccggac
ctgaggctcatgggcggcgaagtcggtgagcgtctggcgaaggcggcggataaggccaac
accgagggcaagaagacgcttttcggttggaagaagccgacgggcctgctcggacaaatc
ctgcgctag
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integrated database retrieval system
